View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1518_high_4 (Length: 230)
Name: NF1518_high_4
Description: NF1518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1518_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 9218996 - 9218796
Alignment:
| Q |
15 |
cataggcatgttatacatttaagcatataacgnnnnnnnnnttt-ataccagtatttatgtgcatatgtatgtctaaaaaggacaaacaactctacaagc |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9218996 |
cataggcatgttatacatttaagcatataacgaaaaaagaattttataccagtatttatgtgcatatgtatgtctaaaaaggacaaacaactctacaagc |
9218897 |
T |
|
| Q |
114 |
tgtacaatgtatatatatgcttctacacaactatctttgttactttctgtcaaaagcattaactaggttgatcagattcactataaccagatgcttgtgc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9218896 |
tgtacaatgtatatatatgcttctacacaactatctttgttactttctgtcaaaagcattaactaggttgatcagattcactataaccagacgcttgtgc |
9218797 |
T |
|
| Q |
214 |
c |
214 |
Q |
| |
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| |
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| T |
9218796 |
c |
9218796 |
T |
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