View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1518_low_1 (Length: 420)
Name: NF1518_low_1
Description: NF1518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1518_low_1 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 4 - 406
Target Start/End: Original strand, 46223221 - 46223629
Alignment:
| Q |
4 |
atgagttataaaaaccgtagtaggaaggaacgaggtagtggtgattcatggttaagtggggaattaaggagagtgagttggaatagttatgattcatgta |
103 |
Q |
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| T |
46223221 |
atgagttataaaaaccgtagtaggaaggaacgaggtagtggtgattcatggttaagtggggaattaaggagagtgagttggaatagttatgattcatgta |
46223320 |
T |
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| Q |
104 |
atagtggagaaattcataagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcctgaaaatggttatagtgatgtaac |
203 |
Q |
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| T |
46223321 |
atagtggagaaattcataagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcctgaaaatggttatagtgatgtaac |
46223420 |
T |
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| Q |
204 |
agagaagtctgatgtttatagttttggtgtgttattacttgttattgtttctgggagaagacctcttcaagtgaatgccggtggt------ggtggggat |
297 |
Q |
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| T |
46223421 |
agagaagtctgatgtttatagttttggtgtgttattacttgttattgtttctgggagaagacctcttcaagtgaatgccggtggtagtggggatggggat |
46223520 |
T |
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| Q |
298 |
ggattcaagcatatttcggagtttaagcgagcaaatttggtttcttgggctagacattgtgcgcgtaatgggaaactactcgaacttgttgatccattag |
397 |
Q |
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| T |
46223521 |
ggattcaagcatatttcagagtttaagcgagcgaatttggtttcttgggctagacattgtgcgcgtaatgggaaactactcgaacttgttgatccattag |
46223620 |
T |
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| Q |
398 |
ttgagttgt |
406 |
Q |
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| T |
46223621 |
ttgagttgt |
46223629 |
T |
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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 226673 - 226599
Alignment:
| Q |
105 |
tagtggagaaattcataagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcc |
179 |
Q |
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| T |
226673 |
tagtggagatattccaaagagtggtggtgtgagtagtacaccaagtatgagaggaaccgtttgttatgttgctcc |
226599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 12952825 - 12952763
Alignment:
| Q |
121 |
aagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcctgaa |
183 |
Q |
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| T |
12952825 |
aagagtggtggaataagtagcacaccgagtatgagaggaactgtttgttacattgctcctgaa |
12952763 |
T |
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