View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1518_low_2 (Length: 339)
Name: NF1518_low_2
Description: NF1518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1518_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 32 - 322
Target Start/End: Complemental strand, 32702763 - 32702481
Alignment:
| Q |
32 |
tgaagtaaatttgaatgaacttgataatggatacgatgtggcacaatgcataagggctgtggctgaacctttgttt---gttagtcattttggtgaaggt |
128 |
Q |
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| T |
32702763 |
tgaagtaaatttgaatgaacttgataatggatacgatgtggcacaatgcataagggctgtggctgaacctttgttgttggttagtcattttggtgaaggt |
32702664 |
T |
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| Q |
129 |
gtcactgaggaggtttttaaccgctttaacaaaaatgcaaccgatcacatgctgccctgcccaaagagaaaactaaggtcataaatattaccatagtatt |
228 |
Q |
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| T |
32702663 |
gtcactgaggaggtttttaaccgctttaacaaaaatgcaaccgatcacatgct-----gcccaaagagaaaactaaggtcataaatattaccata----- |
32702574 |
T |
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| Q |
229 |
gactagaaagccatgatgacatatttgtttgattttatatttgttttaaagatcttcttgttgatagtcaatttgaattatttgcctagccagt |
322 |
Q |
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| T |
32702573 |
-actagaaagccatgattacatatttgtttgattttatatttgttttaaagatcttcttgttgatagttaatttgaattatttgcctagccagt |
32702481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 32626954 - 32626882
Alignment:
| Q |
58 |
atggatacgatgtggcacaatgcataagggctgtggctgaacctttgtttgttagtcattttggtgaaggtgt |
130 |
Q |
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| T |
32626954 |
atggatacaatgtggcacaatgcatgagagctttggctgaacctttgctagtcagtcattttggtgaaggtgt |
32626882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 5810659 - 5810555
Alignment:
| Q |
58 |
atggatacgatgtggcacaatgcataagggctgtggctgaacctttgtttgttagtcattttggtgaaggtgtcactgaggaggtttttaaccgctttaa |
157 |
Q |
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| T |
5810659 |
atggatacaatgtggcacaatgcataagggctgtggctgaacctttgctagctagtcactttggtgaaggtgtcattaaagagatttttaatcgctataa |
5810560 |
T |
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| Q |
158 |
caaaa |
162 |
Q |
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|||| |
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| T |
5810559 |
gaaaa |
5810555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 27735959 - 27735885
Alignment:
| Q |
58 |
atggatacgatgtggcacaatgcataagggctgtggctgaacctttgtttgttagtcattttggtgaaggtgtca |
132 |
Q |
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| T |
27735959 |
atggatacaatatggcacaatgcattagggctgtggctgaacctttgctagttagtcactttggtgaaggtgtca |
27735885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 21941752 - 21941694
Alignment:
| Q |
95 |
tgaacctttgtttgttagtcattttggtgaaggtgtcactgaggaggtttttaaccgct |
153 |
Q |
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| T |
21941752 |
tgaacctttgcttattagtcattttggtgaaggtgtgactgaagaggtatttaaccgct |
21941694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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