View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1518_low_3 (Length: 280)
Name: NF1518_low_3
Description: NF1518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1518_low_3 |
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| [»] scaffold1526 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0642 (2 HSPs) |
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| [»] scaffold0105 (2 HSPs) |
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| [»] scaffold0345 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 3379226 - 3378958
Alignment:
| Q |
3 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnn-----tcaaggaaaacaatccataacttgaaatga |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3379226 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatga |
3379127 |
T |
|
| Q |
98 |
attgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaaca-tnnnnn |
196 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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|
| T |
3379126 |
attaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacattaaaaa |
3379027 |
T |
|
| Q |
197 |
nnnnnnnnnggtctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
265 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3379026 |
gaaaaaaaaggtgtgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
3378958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 286 - 555
Alignment:
| Q |
3 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnn-----tcaaggaaaacaatccataacttgaaatga |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
286 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatga |
385 |
T |
|
| Q |
98 |
attgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat--nnnn |
195 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
386 |
attaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaa |
485 |
T |
|
| Q |
196 |
nnnnnnnnnnggtctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
265 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
486 |
gaaaaaaaaaggtgcgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
555 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 44496494 - 44496224
Alignment:
| Q |
3 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnn------tcaaggaaaacaatccataacttgaaatg |
96 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
44496494 |
cacagacgaaagatgacatttatatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaattcaaggaaaacaatccataaattgaaatg |
44496395 |
T |
|
| Q |
97 |
aattgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat--nnn |
194 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44496394 |
aattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaa |
44496295 |
T |
|
| Q |
195 |
nnnnnnnnnnnggtctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
265 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44496294 |
agaaaaaaaaaggtgcgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
44496224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 52970 - 53241
Alignment:
| Q |
3 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnn----tcaaggaaaacaatccataacttgaaatgaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52970 |
cacagacgaaagatgacatttacatataatccattaaaatacacattggatgtttgaagaaaaaaaaaatcaaggaaaacaatccataacttgaaatgaa |
53069 |
T |
|
| Q |
99 |
ttgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat-----nn |
193 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53070 |
ttaattgacatggctcttgcatactaacaatgcccttcacagtacatataacttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaag |
53169 |
T |
|
| Q |
194 |
nnnnnnnnnnnnggtctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
265 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53170 |
aaaaagaaaaaaggtgtgcatgaaggtgcaaagtccaaattttgctgaagggtaatcaaattaggttagtaa |
53241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 5009 - 4832
Alignment:
| Q |
3 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnn------tcaaggaaaacaatccataacttgaaatg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
5009 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatg |
4910 |
T |
|
| Q |
97 |
aattgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
174 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4909 |
aattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
4832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 4821 - 4766
Alignment:
| Q |
210 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4821 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
4766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 24059 - 24236
Alignment:
| Q |
3 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnn------tcaaggaaaacaatccataacttgaaatg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
24059 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatg |
24158 |
T |
|
| Q |
97 |
aattgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
174 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24159 |
aattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
24236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 24248 - 24303
Alignment:
| Q |
210 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24248 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
24303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 14922 - 14745
Alignment:
| Q |
3 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnnt------caaggaaaacaatccataacttgaaatg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
14922 |
cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatacaaggaaaacaatccataacatgaaatg |
14823 |
T |
|
| Q |
97 |
aattgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
174 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14822 |
aattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
14745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 14733 - 14678
Alignment:
| Q |
210 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14733 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaa |
14678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 28335400 - 28335452
Alignment:
| Q |
84 |
ataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca |
137 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
28335400 |
ataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca |
28335452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 44787355 - 44787407
Alignment:
| Q |
84 |
ataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca |
137 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
44787355 |
ataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca |
44787407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 28335530 - 28335571
Alignment:
| Q |
213 |
atgaagttgcaaagtccaaattttgttgaagggtaatcaaat |
254 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
28335530 |
atgaagctgcaatgtcaaaattttgttgaagggtaatcaaat |
28335571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 44787485 - 44787526
Alignment:
| Q |
213 |
atgaagttgcaaagtccaaattttgttgaagggtaatcaaat |
254 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
44787485 |
atgaagctgcaatgtcaaaattttgttgaagggtaatcaaat |
44787526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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