View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1518_low_4 (Length: 235)
Name: NF1518_low_4
Description: NF1518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1518_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 44715525 - 44715726
Alignment:
| Q |
20 |
tccggtgaacggtgaggaggcaacggccttggggatccatgagaatcagctcatgtaggtcacgagaatcaggtccatatgagtcgacgcggaaggcgac |
119 |
Q |
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| T |
44715525 |
tccggtgaacggtgaggaggcaacggccttggggatccatgagaatcagctcatgtaggtcacgagaatcaggtccatatgagtcgacacggaaggcgac |
44715624 |
T |
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| Q |
120 |
ttgaccgttgcaatcatagacggtgaaaccatcaccggcaaagaaaagagtggttttaagaactgtgtaatgaatctcttctttgaagatgtatccttct |
219 |
Q |
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| T |
44715625 |
ttgaccgttgcaatcatagacggtgaaaccatcaccggcaaagaaaagagtggttttaagaactgtgtaatgaatctcttctttgaagatgtatccttct |
44715724 |
T |
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| Q |
220 |
tg |
221 |
Q |
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| T |
44715725 |
tg |
44715726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 44705557 - 44705745
Alignment:
| Q |
20 |
tccggtgaacggtgaggaggcaacggccttggggatccatgagaatcagctcatgtaggtcacgagaatcaggtccatatgagtcgacgcggaaggcgac |
119 |
Q |
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||||| |||| |||||||| ||||| || | ||||||||| |||| ||||||| |||||||||||||||||||||||||||||| || | ||| ||| |
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| T |
44705557 |
tccggcgaacagtgaggagacaacgaccgtcgggatccattagaacaagctcatctaggtcacgagaatcaggtccatatgagtcaactctgaaaacgag |
44705656 |
T |
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| Q |
120 |
ttgaccgttgcaatcatagacggtgaaaccatcaccggcaaagaaaagagtggttttaagaactgtgtaatgaatctcttctttgaaga |
208 |
Q |
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|||||| | |||||||||||||||||||||| |||| ||||| |||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
44705657 |
ttgaccatgagaatcatagacggtgaaaccatcgccggagaagaagagagaggttttgagaactgtgtaatgaatctcttctttgaaga |
44705745 |
T |
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