View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15190_high_1 (Length: 706)

Name: NF15190_high_1
Description: NF15190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15190_high_1
NF15190_high_1
[»] chr7 (1 HSPs)
chr7 (1-692)||(46959335-46960024)
[»] chr2 (2 HSPs)
chr2 (370-685)||(44522137-44522455)
chr2 (3-219)||(44522569-44522782)


Alignment Details
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Original strand, 46959335 - 46960024
Alignment:
Q  1 gtatcactgcaggcaaatttaatggtttctttggaggccgaagttcctataatattaatgaaggatatgttcgccacttgaacagctgaagtctgcatca 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46959335 gtatcactgcaggcaaatttaatggtttcttcggaggccgaagttcctataatattaatgaaggatatgttcaccacttgaacagctgaagtctgcatca 46959434  T
Q  101 caattcaggacattattacattcttacagnnnnnnntcttcagttgaattaaaatcattatgaaagttcattaatttgaatccttgtaggagattgacaa 200  Q
    |||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46959435 caattcaggacattattacattcttacagaaaaaaatcatcagttgaattaaaatcattatgaaagttcattaatttgaatccttgtaggagattgacaa 46959534  T
Q  201 gaatgtatgtcactgacatacatgattataatcgatgaaaattatgaaatcagctattatattctacaaatcataaagacaattcaaaactatattggct 300  Q
    |||||||||||||||||||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46959535 gaatgtatgtcactgacat----gattataattgatgaaaattatgaaatcagctattatattctacaaatcataaagacaattcaaaactatattggct 46959630  T
Q  301 atctcctcagataagtaaatacaactattaataatgtgtcactgcatgcacatgtagacttacaaaacgaccctgcaaaaatatcttaaaattcaatacc 400  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  46959631 atctcctcagataaataaatacaactattaataatgtgtcactgcatgcacatgtagacttgcaaaatgaccctgcaaaaatatcttaaaattcaatacc 46959730  T
Q  401 tgattcttgcatggaattcgggaatcacagtagtattgatcaattattattggattggacacattttccaccacgatatcctgaaatgtgatattggagg 500  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46959731 tgattcttgcatggaagtcgggaatcacagtagtattgatcaattattattggattggacacattttccatcacgatatcctgaaatgtgatattggagg 46959830  T
Q  501 caagaccatgcccaccctaaagaaaatttaacttgactcaatcaaattgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaact 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46959831 caagaccatgcccaccctaaagaaaatttaacttgactcaatcaaattgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaact 46959930  T
Q  601 tacctgccatgttttgattctcagcccatttttcgtgttcgtaagataagctcc--atatacatttacattttcaatcttctcccatgcctttg 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  46959931 tacctgccatgttttgattctcagcccatttttcgtgttcgtaagataagctccatatatacatttacattttcaatcttctcccatgcctttg 46960024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 370 - 685
Target Start/End: Complemental strand, 44522455 - 44522137
Alignment:
Q  370 accctgcaaaaatatcttaaaattcaatacctgattcttgcatggaattcgggaatcacagtagtattgatcaattattattggattggacacattttcc 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  44522455 accctgcaaaaatatcttaaaattcaatacctgattcttgcatggatgtcgtgaatcgcagtagtattgatctattattattggattggacacattttcc 44522356  T
Q  470 accacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaacttgactcaatcaaattgaacattactgggtgacattt 569  Q
    |  | ||||| ||| |||||||| |||||||||| ||||  |||||||||||||||||||  || ||||||||  | |||  ||| ||| ||||| ||      
T  44522355 attaagatattctggaatgtgatcttggaggcaaaaccactcccaccctaaagaaaatttggctcgactcaatagacttg-tcatcactaggtgaaatag 44522257  T
Q  570 aatgagaatgaaaatgctaaggttac----caacttacctgccatgttttgattctcagcccatttttcgtgttcgtaagataagctccatatacattta 665  Q
    |||||||||||||||| || ||||||     || |||||||||||||||||||||||| |||||| |  |||||   ||||||||||||||  ||| |||    
T  44522256 aatgagaatgaaaatgatacggttacgaagaaagttacctgccatgttttgattctcaccccattatcagtgttgtaaagataagctccatcaacaatta 44522157  T
Q  666 cattttcaatcttctcccat 685  Q
    |||||| |||||||||||||    
T  44522156 cattttgaatcttctcccat 44522137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 44522782 - 44522569
Alignment:
Q  3 atcactgcaggcaaatttaatggtttctttggaggccgaagttcctataatattaatgaaggatatgttcgccacttgaacagctgaagtctgcatcaca 102  Q
    ||||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44522782 atcactgcaggcaaatttaatggtttcttcggtggccgaagttccttgaatattaatgaaggatatgttccccacttgaacagctgaagtctgcatcaca 44522683  T
Q  103 attcaggacattattacattcttacagnnnnnnntcttcagttgaattaaaatcattatgaaagttcattaatttgaatccttgtaggagatt-gacaag 201  Q
    || ||  ||   |||| ||| ||||||       |||||||||||||| |||| || |||||| ||||||||||||||||||||| ||||||| |||| |    
T  44522682 atgcattac---attaaatttttacagcataatatcttcagttgaatt-aaattatcatgaaacttcattaatttgaatccttgttggagattcgacagg 44522587  T
Q  202 aatgtatgtcactgacat 219  Q
    ||||||||||||||||||    
T  44522586 aatgtatgtcactgacat 44522569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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