View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15190_high_4 (Length: 408)
Name: NF15190_high_4
Description: NF15190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15190_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 14516803 - 14516480
Alignment:
| Q |
19 |
tgcagccggtccacctagcatgcagcaattccatcccatgcacagacgttgatttaactgacattcagttaagaccttcccttagttataggggtatgca |
118 |
Q |
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| T |
14516803 |
tgcagccggtccacctagcatgcagcaattccatcccatgcacagacgttgatttaactgacattcagttaagaccttcccttagttataggggaatgca |
14516704 |
T |
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| Q |
119 |
acaagctatgtgttggaactcttatggaaaatcacaaggtcaattagtaccttcaagtattgattattgtttgagaagtggtggtggattaattaagagg |
218 |
Q |
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| T |
14516703 |
acaagctatgtgttggaactcttatggaaaatcacaaggtcaattagtaccttcaagtattgattattgtttgagaagtggtggtggattaattaagagg |
14516604 |
T |
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| Q |
219 |
atagcaaagtcacatgatagtgtatgttataaaatgttatagatgttatctttggttagttttgggttttattgtagcttcccttctccaaatgcttttt |
318 |
Q |
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| T |
14516603 |
atagcaaagtcacatgatagtgtatgttataaaatgttatagatgttatctttagttagtt----------ttgtagcttcccttctccaaatgcttttt |
14516514 |
T |
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| Q |
319 |
aactttgtgaaggtggtgatggtgtaaattttag |
352 |
Q |
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| T |
14516513 |
aactttgtgaaggtggttatggtgtaaattttag |
14516480 |
T |
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