View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15190_low_10 (Length: 248)
Name: NF15190_low_10
Description: NF15190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15190_low_10 |
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| [»] chr4 (6 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 39579663 - 39579417
Alignment:
| Q |
2 |
gggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaag |
101 |
Q |
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| T |
39579663 |
gggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaag |
39579564 |
T |
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| Q |
102 |
ggtatgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagcaaag |
201 |
Q |
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| T |
39579563 |
ggtatgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagcaaag |
39579464 |
T |
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| Q |
202 |
gcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
248 |
Q |
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| T |
39579463 |
gcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
39579417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 39510231 - 39509984
Alignment:
| Q |
1 |
agggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaa |
100 |
Q |
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| T |
39510231 |
agggtcaggtcaaggactacctgaatttcagactgagataatggttttgtcaaagattcgtcatcgacaccttgtttccttaattgggtattgtgatgaa |
39510132 |
T |
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| Q |
101 |
gggtatgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagcaaa |
200 |
Q |
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| T |
39510131 |
aggtatgagatgatacttgtttatgagtacatggaaaaggggacacttaaagaaagtttgtaaggtgcaaatttgcctagtttcttgacttggaagcaaa |
39510032 |
T |
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| Q |
201 |
ggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
248 |
Q |
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| T |
39510031 |
ggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
39509984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 39575124 - 39574884
Alignment:
| Q |
5 |
tcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaagggt |
104 |
Q |
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| T |
39575124 |
tcaggtcaaggacgtcatgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcatattgtgatgaaaggt |
39575025 |
T |
|
| Q |
105 |
atgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagcaaaggct |
204 |
Q |
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| T |
39575024 |
gtgagatgatacttgtttacgagtacatggaaaatgggacacttagagataatttgtacgatacaaatttgcc---ttgtttgacttggaagcaaaggct |
39574928 |
T |
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| Q |
205 |
tgagatttgtattggtgctgctagaggtcttcattaccttcaca |
248 |
Q |
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| T |
39574927 |
tgagatttgcattggtgctgctagaggtcttcattaccttcaca |
39574884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 39543289 - 39543049
Alignment:
| Q |
5 |
tcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaagggt |
104 |
Q |
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||||||||||||| | ||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |
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| T |
39543289 |
tcaggtcaaggacaacatgaatttcaaactgagataatggttctgtccaagattcgtcacaaacaccttgtttccttaatagggtattgtgatgaaaggt |
39543190 |
T |
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| Q |
105 |
atgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagcaaaggct |
204 |
Q |
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| T |
39543189 |
gtgagatgatacttgtttatgagtacatggaaaatggtacacttagggagaatttatacaatacaaatttgcc---ttgtttgacttggaagcaaaggct |
39543093 |
T |
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| Q |
205 |
tgagatttgtattggtgctgctagaggtcttcattaccttcaca |
248 |
Q |
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| T |
39543092 |
tgagatttgcattggtgctgctagaggtcttcattaccttcaca |
39543049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 39520485 - 39520341
Alignment:
| Q |
5 |
tcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaagggt |
104 |
Q |
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||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |
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| T |
39520485 |
tcaggtcaaggtctgcctgaatttcagactgagataatggttttgtccaagattcgtcatcggcatcttgtttccttaattgggtattgtgatgaaaggt |
39520386 |
T |
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| Q |
105 |
atgagatgatacttgtttatgaatatatggaaaaagggacactta |
149 |
Q |
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| T |
39520385 |
atgagatgatacttgtttatgagtacatggaaaaggggacactta |
39520341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 46271665 - 46271722
Alignment:
| Q |
191 |
tggaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
248 |
Q |
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| T |
46271665 |
tggaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcaca |
46271722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 35904726 - 35904669
Alignment:
| Q |
191 |
tggaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
248 |
Q |
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|||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
35904726 |
tggaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca |
35904669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 27539427 - 27539484
Alignment:
| Q |
191 |
tggaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
248 |
Q |
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|||||||||||||||||||| || ||||| |||||| ||||||| || || ||||||| |
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| T |
27539427 |
tggaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcaca |
27539484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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