View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15190_low_2 (Length: 503)

Name: NF15190_low_2
Description: NF15190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15190_low_2
NF15190_low_2
[»] chr6 (7 HSPs)
chr6 (25-489)||(16283243-16283707)
chr6 (198-236)||(16282020-16282058)
chr6 (199-234)||(16282879-16282914)
chr6 (87-117)||(16283118-16283148)
chr6 (32-81)||(16283744-16283793)
chr6 (199-231)||(16281426-16281458)
chr6 (88-161)||(16281679-16281754)


Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 25 - 489
Target Start/End: Original strand, 16283243 - 16283707
Alignment:
Q  25 catttcgctctgaaaattgagattttatgcgctcgttgtttttgtatgttttattttcgttgagaatttcaaaattgcgaggttagtttcagtttacgtt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16283243 catttcgctctgaaaattgagattttatgcgctcgttgtttttgtatgttttattttcgttgagaatttcaaaattgcgaggttagtttcagtttacgtt 16283342  T
Q  125 ttgctttgccgacgaacaattgatgcgtttcgatcttcatgtatactgtgttgattttcatttttcactgtatgcattttactctgaaaattgtgattct 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16283343 ttgctttgccgacgaacaattgatgcgtttcgatcttcatgtatattgtgttgattttcatttttcactgtatgcattttactctgaaaattgtgattct 16283442  T
Q  225 atgtgctcgttgcggcaagaagcagattttgtaactctgatgaaatttttctgtttttatctcattggtcctagtgtagttgtttcgattttcgttccac 324  Q
    |||| |  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16283443 atgtacctgttgcggcgagaagcagattttgtaactctgatgaaatttttctgtttttatctcatttgtcctagtgtagttgtttcgattttcgttccac 16283542  T
Q  325 actgttagcatttcatttcactcctgagaatctctttgttcattgtttttggatgttttgattgtgtagcagcgagaagtagattttatttttgaagtta 424  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16283543 actgttagcatttcatttcactcttgaggatctctttgttcattgtttttggatgttttgattgtgtagcagcgagaagtagattttatttttgaagtta 16283642  T
Q  425 atttcagtttacttttcgtttctcccatgaagaattagtgtttcaatcctcatgtagattctgtg 489  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16283643 atttcagtttacttttcgtttctcccgtgaagaattagtgtttcaatcctcatgtagattctgtg 16283707  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 16282020 - 16282058
Alignment:
Q  198 gcattttactctgaaaattgtgattctatgtgctcgttg 236  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  16282020 gcattttactctgaaaattgtgattctatgtgctagttg 16282058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 16282879 - 16282914
Alignment:
Q  199 cattttactctgaaaattgtgattctatgtgctcgt 234  Q
    ||||||||||||||||||| ||||||||||||||||    
T  16282879 cattttactctgaaaattgagattctatgtgctcgt 16282914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 117
Target Start/End: Original strand, 16283118 - 16283148
Alignment:
Q  87 agaatttcaaaattgcgaggttagtttcagt 117  Q
    |||||||||||||||||||||||||||||||    
T  16283118 agaatttcaaaattgcgaggttagtttcagt 16283148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 16283744 - 16283793
Alignment:
Q  32 ctctgaaaattgagattttatgcgctcgttgtttttgtatgttttatttt 81  Q
    ||||||||||| | |||||||  ||| |||||||||||||||||||||||    
T  16283744 ctctgaaaatttatattttatttgcttgttgtttttgtatgttttatttt 16283793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 16281426 - 16281458
Alignment:
Q  199 cattttactctgaaaattgtgattctatgtgct 231  Q
    ||||||||||||| |||||||||||||||||||    
T  16281426 cattttactctgacaattgtgattctatgtgct 16281458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 16281679 - 16281754
Alignment:
Q  88 gaatttcaaaattgcgaggttagtt--tcagtttacgttttgctttgccgacgaacaattgatgcgtttcgatctt 161  Q
    |||||||||||||||||||||||||  | |||| |||||||||||  || | ||| | ||||||||||| ||||||    
T  16281679 gaatttcaaaattgcgaggttagtttatgagttcacgttttgcttctccaatgaagagttgatgcgttttgatctt 16281754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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