View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15190_low_3 (Length: 423)
Name: NF15190_low_3
Description: NF15190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15190_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 35904702 - 35905120
Alignment:
| Q |
1 |
tgcaaatctccaacctttgcttccatgataaagtatctattggtttgtttcctttgtatagatgctccctcatggttccatgagccatgtaatcataaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35904702 |
tgcaaatctccaacctttgcttccatgataaagtatctattggtttgtttcctttgtatagatgctccctcatggttccatgagccatgtaatcataaac |
35904801 |
T |
|
| Q |
101 |
caaacacatttcctcatcttcctcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagcatctcaatttcagtttgaaattcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35904802 |
caaacacatttcctcatcttcctcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagcatctcaatttcagtttgaaattcattt |
35904901 |
T |
|
| Q |
201 |
actccttgttctgattgtggatttgatctcttaatagccactttaacaccattatcaataacacccttgtaaacctttccaaaccctcctacaccaataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35904902 |
actccttgttctgattgtggatttgatctcttaatagccactttaacaccattatcaataacacccttgtaaacctttccaaaccctcctacaccaataa |
35905001 |
T |
|
| Q |
301 |
cattggactcatcaaaattcttggttgcttgcttcatctcttgtaaagagaaatatcgacacagtccttgagccatggctaaatttgcaccactgcccat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905002 |
cattggactcatcaaaattcttggttgcttgcttcatctcttgtaaagagaaatatcgacacagtccttgagccatggctaaatttgcaccactgcccat |
35905101 |
T |
|
| Q |
401 |
agtactcttctctgctcct |
419 |
Q |
| |
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|||||||||| ||| |||| |
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| T |
35905102 |
agtactcttccctgatcct |
35905120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 47624541 - 47624163
Alignment:
| Q |
1 |
tgcaaatctccaacctttgcttccatgataaagtatctattggtttgtttcctttgtatagatgctccctcatggttccatgagccatgtaatcataaac |
100 |
Q |
| |
|
|||| ||||| || ||||||||||| | |||| ||| || || ||| | || ||||| | ||| ||||| | ||||||| |||||||||| |||||||| |
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| T |
47624541 |
tgcagatctctaatctttgcttccacgttaaaatatttaaaggcttgatacccttgtacaaatgttccctaaaggttccaagagccatgtagtcataaac |
47624442 |
T |
|
| Q |
101 |
caaacacatttcctcatcttcctcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagcatctcaatttcagtttgaaattcattt |
200 |
Q |
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||||||||| || | ||||||||| ||||| |||||||| ||||| ||||| || ||||| | ||| |||||||||||||| || || || |||||||| |
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| T |
47624441 |
caaacacatctcattatcttcctcgcaaaatccaatcaaggacaccaaatgcttgtgtctcaacttagaaagcatctcaatctcggtctggaattcattg |
47624342 |
T |
|
| Q |
201 |
actccttgttctgattgtggatttgatctcttaatagccactttaacaccattatcaataacacccttgtaaacctttccaaaccctcctacaccaataa |
300 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||| |||||| | ||||||||||| ||||||||||||||||||||||| || || || ||||| | |
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| T |
47624341 |
actccttgttctgactgtggatttgacctcttaatcgccactagcattccattatcaatgacacccttgtaaacctttccaaatccaccaactccaatca |
47624242 |
T |
|
| Q |
301 |
cattggactcatcaaaattcttggttgcttgcttcatctcttgtaaagagaaatatcgacacagtccttgagccatggc |
379 |
Q |
| |
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| ||||||||||||||| | |||||||||||||| ||||||||||| || ||||| ||||| || ||||| | |||||| |
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|
| T |
47624241 |
cgttggactcatcaaaactgttggttgcttgctttatctcttgtaacgaaaaatagcgacatagaccttgggtcatggc |
47624163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 13973918 - 13974106
Alignment:
| Q |
77 |
tccatgagccatgtaatcataaaccaaacacatttcctcatcttcctcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagcatc |
176 |
Q |
| |
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||||| || |||||| |||||||| | | |||||| |||| ||| |||||| | ||||||| || || |||||| ||||||||||||| || | ||| |
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| T |
13973918 |
tccattaggcatgtactcataaacaagaatcatttcttcattttcatcacaatatccaatcattgaaaccaaatgtctatgtctaagcttagacaacatt |
13974017 |
T |
|
| Q |
177 |
tcaatttcagtttgaaattcatttactccttgttctgattgtggatttgatctcttaatagccactttaacaccattatcaataacacc |
265 |
Q |
| |
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| |||||||| || |||||||| | ||||||||||||||||||||| |||||| | ||| |||| ||| || | |||||| ||||| |
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| T |
13974018 |
tggatttcagtctggaattcattgataccttgttctgattgtggatttcctctcttgacagcaacttgaaccccttcatcaatcacacc |
13974106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 11380400 - 11380291
Alignment:
| Q |
75 |
gttccatgagccatgtaatcataaaccaaacacatttc-ctcatcttcctcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagc |
173 |
Q |
| |
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||||||| |||||||| |||||||||||| |||||| || ||| | ||||| ||||||||||||||||| | |||| | ||||| || ||||| ||| |
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| T |
11380400 |
gttccatttgccatgtactcataaaccaaaatcatttcacttttct-cttcacagaaaccaatcaaagacacaagatgtctgtgtcttagttttgagagc |
11380302 |
T |
|
| Q |
174 |
atctcaatttc |
184 |
Q |
| |
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||||||||||| |
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|
| T |
11380301 |
atctcaatttc |
11380291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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