View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15190_low_5 (Length: 401)
Name: NF15190_low_5
Description: NF15190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15190_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 37282295 - 37281924
Alignment:
| Q |
18 |
ataaagtgtagaccatcaaatataagatgcatctaagagcaacgagatattttgtgatgtaaaaagattgactattgaggtagtttgaattatatggcct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |
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| T |
37282295 |
ataaagtgtagaccatcaaatataagatgcatctaagagcaacgagatattttgtgatctaagaaaattgactattgaggtagtttgaattatatggcct |
37282196 |
T |
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| Q |
118 |
tcagtcnnnnnnntttatattctcaactgtaatatttatgaacaaatatgtttaaatatagaaaatttaattttattaattattgccaaaagttgttagc |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37282195 |
tcagtcaaatttttttatattctcaactgtaatatttatgaacaaatatgtttaaatatagaaaatttaattttattaattattgccaaaagttgttagc |
37282096 |
T |
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| Q |
218 |
gcaatcatagcagaaacatactttggaactnnnnnnntgaattctaatgccagcgcaattttgacttttgtttaataaaatccttgtaagttaagtggtg |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37282095 |
gcaatcatagcagaaacatactttggaactaaaaaaatgaattctaatgccagcgcaattttgacttttgtttaataaaatccttgtaagttaagtggtg |
37281996 |
T |
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| Q |
318 |
cgacacaataactatataaagcttgccaattgccaaatggagtacagccccacacttcacttatcttacctt |
389 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37281995 |
cgacacaataactatacaaagcttgccaattgccaaatggagtacagccccacacttcacttatcttacctt |
37281924 |
T |
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