View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15190_low_7 (Length: 346)
Name: NF15190_low_7
Description: NF15190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15190_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 38674455 - 38674116
Alignment:
| Q |
1 |
atgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctttgaaggattttatattaattctcacaaactatatgatatgatatgat |
100 |
Q |
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| T |
38674455 |
atgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctttgaaggagtttat--taattctcacaaactatatgatatgatatgat |
38674358 |
T |
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| Q |
101 |
-----gaaattaaattgtgatatgttgatgtgttttgatggaatgagggg-tggcacaactcatatatatag-ggagtggaatttgaagtgtttattgtt |
193 |
Q |
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| T |
38674357 |
atgatgaaattaaattgtgatatgttaatgtgttttgatgaaaggagggggtggcataactcatttatatagaggagtggaattaaaa-tgtttattgtt |
38674259 |
T |
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| Q |
194 |
ttactttgactttgaaggcttttgaatattgaaaattttgaatagcaataacttggactccaaacacgcgacccatatcactagaatatgaccatgtcaa |
293 |
Q |
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| T |
38674258 |
ttgctttgactgtgaaggcttttgaatattgaaaaatttgaatagcaataacttggactccaaacccgcgacccatatcactagaatatgaccatgtcaa |
38674159 |
T |
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| Q |
294 |
aaaactgaacaagaaagagtaaatagtgtaacatgtgcctatg |
336 |
Q |
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| T |
38674158 |
aaaactgaacaagaaagagtaaacagtgtaacatgtgcctatg |
38674116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 38666704 - 38666388
Alignment:
| Q |
1 |
atgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctttgaaggattttatattaattctcacaaactatatgatatgatatgat |
100 |
Q |
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| T |
38666704 |
atgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctttgaaggagtttat--taattctcacaaactatatgatatgatatgat |
38666607 |
T |
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| Q |
101 |
gaaattaaattgtgatatgttgatgtgttttgatggaatga-ggggtggcacaactcatatatatag-ggagtggaatttgaagtgtttattgttttact |
198 |
Q |
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| T |
38666606 |
gaaattaaattgtgatatgttaatgtgttttgatgaaaggagggggtggcataactcatttatatagaggagtggaa-ttaaaatgtttattgttttgct |
38666508 |
T |
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| Q |
199 |
ttgactttgaaggcttttgaatattgaaaattttgaatagcaataacttggactccaaacacgcgacccatatcactagaatatgaccatgtcaaaaaac |
298 |
Q |
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| T |
38666507 |
ttgactgtgaaag-gtttgaatattgaaaaattggaatagcaataccttggactccaaacac---acccatatcactaaaacatgactatgtcaaaatat |
38666412 |
T |
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| Q |
299 |
tgaacaagaaagagtaaatagtgt |
322 |
Q |
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| T |
38666411 |
tgaacaagaaagagtaaacagtgt |
38666388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 38668967 - 38669171
Alignment:
| Q |
1 |
atgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctttgaaggattttatattaattctcacaaactatatgatatgatatgat |
100 |
Q |
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| T |
38668967 |
atgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctttgaaggagtttat--taattctcacaaactatatgatatgatatgat |
38669064 |
T |
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| Q |
101 |
gaaattaaattgtgatatgttgatgtgttttgatggaatgaggggtggcacaactcatatatatagggagtggaatttgaagtgtttattgttttacttt |
200 |
Q |
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| T |
38669065 |
gaaattaaattgtgatatgttaatgtgttttgatggaaggaggggtgg--caactcatatatatagggagtggaatttgaagtgtttattgttttacttt |
38669162 |
T |
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| Q |
201 |
gactttgaa |
209 |
Q |
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| T |
38669163 |
gactttgaa |
38669171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 38669218 - 38669287
Alignment:
| Q |
260 |
cgcgacccatatcactagaatatgaccatgtcaaaaaactgaacaagaaagagtaaatagtgtaacatgt |
329 |
Q |
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| T |
38669218 |
cgcgacccataacactaaaacacgaccatgtcaaaaaattgaacaagaaagagtaagcagtgtaatatgt |
38669287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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