View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15191_low_1 (Length: 503)
Name: NF15191_low_1
Description: NF15191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15191_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 125 - 486
Target Start/End: Original strand, 32888451 - 32888814
Alignment:
| Q |
125 |
tgggttacctaatctttgactcactcacaattaactactaattgggaattaccttactataaatgagagaatagacaactagctttctttttaaaatttt |
224 |
Q |
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| T |
32888451 |
tgggttacctaatctttgactcactcacaattaactactaattgggaattaccttactataaatgagagaatagacaactagctttcttttaaaaaattt |
32888550 |
T |
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| Q |
225 |
ctctgtctttgtaaaatgatataggaacactttatttccaaggataataactctcttggggagtgaaatcaatgaaagtttagtttcacactttgaaaat |
324 |
Q |
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| T |
32888551 |
ctctgtctttgtaaaatgatataggaacactttatttccaagcataataactctcttagtgagtgaaatcaatgacagtttagtttcacattttgaaaat |
32888650 |
T |
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| Q |
325 |
aaaccacacataaactggtgaggccagtttcattcaataagaaattgaacgttg---gaatgagcgttgaccgttgaagatagattgtttataatagttt |
421 |
Q |
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| T |
32888651 |
aaaccacacataaaatggtgaggccagtttcattcaataagaaattgaacgttggaagaatgagtgttgactgttgaagatagattgtttataatagttt |
32888750 |
T |
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| Q |
422 |
tagtgtttcgatatttgatgnnnnnnnnncacgagatactttgtgtgtttatcattgtcgttttt |
486 |
Q |
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| T |
32888751 |
tagtgtttcgatatttggtg-ttttttttcacgagatactttgtgtgtttatcattgtcgttttt |
32888814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 32888334 - 32888399
Alignment:
| Q |
5 |
atagccattggattccactttccagcttgtcctttcctcttacttagagtaacaactactgtatct |
70 |
Q |
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| T |
32888334 |
atagccattggtttccactttccagcttgtcctttcctcttacttagagtaacaactactgtatct |
32888399 |
T |
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