View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15191_low_3 (Length: 314)
Name: NF15191_low_3
Description: NF15191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15191_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 33258141 - 33258438
Alignment:
| Q |
19 |
atttatgtgaatatatgagctgagaataagtattctcatat--gttacaagattgagaaataattattcttgggtataaagattcatgagaataaaataa |
116 |
Q |
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| T |
33258141 |
atttatgtgaatacatgagctgagaataagtatcctcatgtccgttacaagattgagaaataattattcttgagtataaagattcatgagaataaaataa |
33258240 |
T |
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| Q |
117 |
tttc-----------aatattttcataaaattatttctaaattaaatggtggaaaagtgggttccaattttcctaggaatattagagtcgtgctaataac |
205 |
Q |
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| T |
33258241 |
cttctaataaattttaatatttccataaaattatttctaaattaaatggtggaaaagtgggttccaattttcctaggaatattagtgtcgtgctaataac |
33258340 |
T |
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| Q |
206 |
ccatttgacagtgtaaaactcacgtgtctactccaagcaagtgc---atgatgatcttcaagtcatgggttgatatttgggtcatgatgatattcatg |
300 |
Q |
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| T |
33258341 |
ccatttgacagtgtaaaactcacgtgtctactccaagcaagtgcatgatgatgatcttcaagtcatgggttgatatttgggtcatgatgatattcatg |
33258438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 25960613 - 25960725
Alignment:
| Q |
59 |
tgttacaagattgagaaataattattcttgggtataaagattcatgagaataaaataa-tttcaatattttcataaaattatttctaaattaaatggtgg |
157 |
Q |
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| T |
25960613 |
tgttacaagattgagaaaaaattaatcctgggtataacggttcctgggaatgaaataacttccaatattcccatgaaattattcccatgttaaagggtgg |
25960712 |
T |
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| Q |
158 |
aaaagtgggttcc |
170 |
Q |
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| T |
25960713 |
gaaagtggattcc |
25960725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 30288550 - 30288493
Alignment:
| Q |
59 |
tgttacaagattgagaaataattattcttgggtataaagattcatgagaataaaataa |
116 |
Q |
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| T |
30288550 |
tgttacaagattgagaaattcttattcttgaatatcaaggttcatgagaataaaataa |
30288493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 42770478 - 42770535
Alignment:
| Q |
59 |
tgttacaagattgagaaataattattcttgggtataaagattcatgagaataaaataa |
116 |
Q |
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| T |
42770478 |
tgttacaagattgagaaaaaattattcatggatagaaagattcctaagaataaaataa |
42770535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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