View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15192_high_11 (Length: 409)

Name: NF15192_high_11
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15192_high_11
NF15192_high_11
[»] chr3 (7 HSPs)
chr3 (1-201)||(10300091-10300293)
chr3 (1-201)||(10320523-10320728)
chr3 (1-124)||(10337639-10337762)
chr3 (288-335)||(26953940-26953987)
chr3 (288-350)||(1051291-1051353)
chr3 (288-338)||(18517720-18517770)
chr3 (288-332)||(25760062-25760106)
[»] chr8 (9 HSPs)
chr8 (287-349)||(26657708-26657770)
chr8 (288-349)||(21593225-21593286)
chr8 (288-349)||(24184726-24184787)
chr8 (288-336)||(23595419-23595467)
chr8 (288-336)||(23604341-23604389)
chr8 (288-331)||(18036809-18036852)
chr8 (288-353)||(43848073-43848138)
chr8 (308-349)||(45268810-45268851)
chr8 (288-336)||(16290898-16290946)
[»] scaffold0068 (1 HSPs)
scaffold0068 (288-348)||(2336-2396)
[»] chr6 (17 HSPs)
chr6 (288-352)||(13570507-13570571)
chr6 (288-341)||(13575043-13575096)
chr6 (288-341)||(13577582-13577635)
chr6 (288-340)||(13565955-13566007)
chr6 (288-335)||(20899004-20899051)
chr6 (288-338)||(11319511-11319561)
chr6 (288-338)||(12435996-12436046)
chr6 (288-349)||(14641478-14641539)
chr6 (288-324)||(24617733-24617769)
chr6 (288-352)||(31633554-31633618)
chr6 (287-349)||(3056978-3057040)
chr6 (287-332)||(24205501-24205546)
chr6 (288-349)||(34338069-34338130)
chr6 (288-324)||(8483632-8483668)
chr6 (288-324)||(15141904-15141940)
chr6 (288-348)||(26592498-26592558)
chr6 (288-332)||(30884442-30884486)
[»] chr5 (11 HSPs)
chr5 (288-348)||(21711514-21711574)
chr5 (288-349)||(15614779-15614840)
chr5 (288-331)||(2259390-2259433)
chr5 (288-349)||(35341930-35341991)
chr5 (288-352)||(31329249-31329313)
chr5 (301-352)||(14480314-14480365)
chr5 (289-332)||(25538844-25538887)
chr5 (288-350)||(24122980-24123042)
chr5 (288-349)||(4120561-4120622)
chr5 (288-349)||(5784460-5784521)
chr5 (288-324)||(24765501-24765537)
[»] chr7 (3 HSPs)
chr7 (96-180)||(35631565-35631651)
chr7 (288-335)||(1633346-1633393)
chr7 (288-330)||(28780223-28780265)
[»] chr2 (5 HSPs)
chr2 (291-353)||(29216648-29216709)
chr2 (291-353)||(29329947-29330008)
chr2 (288-343)||(12102851-12102906)
chr2 (291-349)||(22169941-22169999)
chr2 (288-349)||(40926436-40926497)
[»] chr4 (5 HSPs)
chr4 (287-348)||(11415951-11416012)
chr4 (291-332)||(37005893-37005934)
chr4 (289-353)||(41068900-41068963)
chr4 (288-322)||(34657915-34657949)
chr4 (288-349)||(8667073-8667134)
[»] chr1 (15 HSPs)
chr1 (288-349)||(10032063-10032124)
chr1 (290-339)||(14986127-14986176)
chr1 (297-343)||(26505933-26505979)
chr1 (295-336)||(19088923-19088964)
chr1 (288-332)||(10433239-10433283)
chr1 (288-324)||(19054385-19054421)
chr1 (287-338)||(2583065-2583116)
chr1 (288-331)||(16816227-16816270)
chr1 (287-338)||(20808742-20808793)
chr1 (288-338)||(10423787-10423837)
chr1 (288-338)||(27035838-27035888)
chr1 (288-342)||(34528901-34528955)
chr1 (288-349)||(33064795-33064856)
chr1 (296-349)||(46391501-46391554)
chr1 (288-352)||(41574271-41574335)
[»] scaffold0009 (1 HSPs)
scaffold0009 (288-335)||(1483-1530)
[»] scaffold0437 (2 HSPs)
scaffold0437 (288-349)||(14305-14366)
scaffold0437 (288-348)||(11456-11516)
[»] scaffold0314 (1 HSPs)
scaffold0314 (288-338)||(583-633)
[»] scaffold0292 (1 HSPs)
scaffold0292 (288-338)||(21262-21312)
[»] scaffold0257 (1 HSPs)
scaffold0257 (288-338)||(16238-16288)
[»] scaffold0196 (1 HSPs)
scaffold0196 (288-349)||(806-867)
[»] scaffold0166 (1 HSPs)
scaffold0166 (288-324)||(7998-8034)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 10300091 - 10300293
Alignment:
Q  1 taataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattcatgtataa 100  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10300091 taataaggatattcttaaatagcaagaagagattgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattcatgtataa 10300190  T
Q  101 atatttacagcataaactatgattg-atttctgtcgacaactttgttacactaaa-ttatcaaatttcataatgaatatgttttaaagaaaatatgtgca 198  Q
    |||||||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||    
T  10300191 atatttacagcatagactatgattgaatctctgtcgacaactttgttacactaaagttatcaaatttcataatgaatatgttttaaaaaaaaaatgtgca 10300290  T
Q  199 tat 201  Q
    |||    
T  10300291 tat 10300293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 10320523 - 10320728
Alignment:
Q  1 taataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattcatgtataa 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10320523 taataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctacctagcattcctcttttctcaaattcatgtataa 10320622  T
Q  101 ----atatttacagcataaactatgattga-tttctgtcgacaactttgttacactaaa-ttatcaaatttcataatgaatatgttttaaagaaaatatg 194  Q
        |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||    
T  10320623 atatatatatacagcataaactatgattgattttctgtcgacaactttgttacactaaagttatcaaatttcataatgaatatgttttaaacaaaa-atg 10320721  T
Q  195 tgcatat 201  Q
    |||||||    
T  10320722 tgcatat 10320728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 10337639 - 10337762
Alignment:
Q  1 taataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattcatgtataa 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  10337639 taataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattccttctttctcaaattcatgtataa 10337738  T
Q  101 atatttacagcataaactatgatt 124  Q
    ||||||||||||||||||||||||    
T  10337739 atatttacagcataaactatgatt 10337762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 26953987 - 26953940
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgc 335  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  26953987 tagttgggatgtcggtgtttcctcttgatgcatgtcgtctctccttgc 26953940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 1051353 - 1051291
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaat 350  Q
    ||||||||||||||||| | ||||||||||  |||||||||||||||||||| ||| ||||||    
T  1051353 tagttgggatgtcggtgttccctcttgatgtttgtcctctctccttgcttagaaaaaaaaaat 1051291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 18517720 - 18517770
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    |||||||||||||| || | ||||||||||||||||| |||||||||||||    
T  18517720 tagttgggatgtcgatgttgcctcttgatgcatgtccactctccttgctta 18517770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 25760062 - 25760106
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctcct 332  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  25760062 tagttgggatgtcggtgttgcctcttgatgcttgtcctctctcct 25760106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 26657708 - 26657770
Alignment:
Q  287 ttagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  26657708 ttagttgggatgtcggtgtttcctcttgatgcatgtcctctctccttgcttagcaaaaaaaaa 26657770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 21593225 - 21593286
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||| |||||| || | ||||||||||| ||||||||||||||||||| |||| |||||    
T  21593225 tagttggaatgtcgatgatgcctcttgatgcctgtcctctctccttgcttatcaaaaaaaaa 21593286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 24184787 - 24184726
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||||||||||||| | ||||||||||  |||||||||||| || |||||||| |||||    
T  24184787 tagttgggatgtcggtgttccctcttgatgtttgtcctctctccctgtttagcaaaaaaaaa 24184726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 23595419 - 23595467
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgct 336  Q
    |||||||||||||| || | ||||||||||| |||||||||||||||||    
T  23595419 tagttgggatgtcgatgatgcctcttgatgcgtgtcctctctccttgct 23595467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 23604341 - 23604389
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgct 336  Q
    |||||||||||||| || | ||||||||||| |||||||||||||||||    
T  23604341 tagttgggatgtcgatgatgcctcttgatgcgtgtcctctctccttgct 23604389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 18036852 - 18036809
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctcc 331  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||    
T  18036852 tagttgggatgtcggtgtttcctcttgatgtttgtcctctctcc 18036809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 43848138 - 43848073
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaataaa 353  Q
    |||||||||||| | || |||| |||||||| |||||  |||||| |||||||||| |||||||||    
T  43848138 tagttgggatgttgttgcttccccttgatgcctgtccaatctcctggcttagcaaaaaaaaataaa 43848073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 45268851 - 45268810
Alignment:
Q  308 cctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||||||| ||||||||||||||||||| |||| |||||    
T  45268851 cctcttgatgcctgtcctctctccttgcttatcaaaaaaaaa 45268810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 16290898 - 16290946
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgct 336  Q
    ||||||||||||||||| | ||||||||||  |||||| ||||||||||    
T  16290898 tagttgggatgtcggtgttgcctcttgatgtttgtcctttctccttgct 16290946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 2336 - 2396
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaa 348  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||| ||||    
T  2336 tagttgggatgtcggtgttccctcttgatgcttgtcctctctccttgtttagcaaaaaaaa 2396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 13570507 - 13570571
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaataa 352  Q
    |||||||||||| |||| | |||||||||||||||||||||||| ||||||||| | ||||||||    
T  13570507 tagttgggatgtaggtgttccctcttgatgcatgtcctctctccctgcttagcacaaaaaaataa 13570571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 13575043 - 13575096
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagca 341  Q
    ||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  13575043 tagttgggatgtcggtgttccctcttgatgcatgtcttctctccctgcttagca 13575096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 13577582 - 13577635
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagca 341  Q
    ||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  13577582 tagttgggatgtcggtgttccctcttgatgcatgtcttctctccctgcttagca 13577635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 13565955 - 13566007
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagc 340  Q
    |||||||||||||| || | |||||||||||||||||||||||| ||||||||    
T  13565955 tagttgggatgtcgttgttccctcttgatgcatgtcctctctccctgcttagc 13566007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 20899004 - 20899051
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgc 335  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  20899004 tagttgggatgtcggtgttgcctcttgatgcttgtcctctctccttgc 20899051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 11319511 - 11319561
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||| |||||    
T  11319511 tagttgagatgttggtgcttcctcttgatgcatgtcctctctcctagctta 11319561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 12435996 - 12436046
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    |||||||||||||| || | |||| ||||||||||||||||||||||||||    
T  12435996 tagttgggatgtcgatgatgcctcctgatgcatgtcctctctccttgctta 12436046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 14641478 - 14641539
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||||||||||||| | ||||||||||  |||||||||||| || |||||||| |||||    
T  14641478 tagttgggatgtcggtgttccctcttgatgtttgtcctctctccctgtttagcaaaaaaaaa 14641539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 24617769 - 24617733
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcc 324  Q
    ||||||||||||||||| |||||||||||||||||||    
T  24617769 tagttgggatgtcggtgtttcctcttgatgcatgtcc 24617733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 31633618 - 31633554
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaataa 352  Q
    ||||||||||||||||| ||||||  ||||  ||||||  |||||||||||||||| ||||||||    
T  31633618 tagttgggatgtcggtgtttcctcccgatgtctgtccttactccttgcttagcaaaaaaaaataa 31633554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 3056978 - 3057040
Alignment:
Q  287 ttagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||||||||||| || |  |||||||||| ||||| ||||||||||||| |||| |||||    
T  3056978 ttagttgggatgtcgatgttgtctcttgatgcctgtccactctccttgcttatcaaaaaaaaa 3057040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 24205501 - 24205546
Alignment:
Q  287 ttagttgggatgtcggtggttcctcttgatgcatgtcctctctcct 332  Q
    ||||||||||||||| |  ||||||| |||||||||||||||||||    
T  24205501 ttagttgggatgtcgttctttcctctcgatgcatgtcctctctcct 24205546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 34338130 - 34338069
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    |||||||||||||| || ||||||||||||  |||| ||||||||| |||| |||| |||||    
T  34338130 tagttgggatgtcgatgattcctcttgatggctgtcatctctccttacttatcaaaaaaaaa 34338069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 8483668 - 8483632
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcc 324  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  8483668 tagttgggatgtccgtgtttcctcttgatgcatgtcc 8483632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 15141940 - 15141904
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcc 324  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  15141940 tagttgggatgtcggtgtttcctcttgatgcacgtcc 15141904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 26592558 - 26592498
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaa 348  Q
    ||||||| ||||| ||| |  |||||||||||||| |||||||||||||||| ||| ||||    
T  26592558 tagttggaatgtcagtgttctctcttgatgcatgttctctctccttgcttaggaaaaaaaa 26592498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 30884442 - 30884486
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctcct 332  Q
    |||||||||||||| || |||  ||||||||||||||||||||||    
T  30884442 tagttgggatgtcgttgattctccttgatgcatgtcctctctcct 30884486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 21711574 - 21711514
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaa 348  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||| ||||    
T  21711574 tagttgggatgtcggtgttccctcttgatgcttgtcctctctccttgtttagcaaaaaaaa 21711514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 15614779 - 15614840
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||||||||||||| | ||||||||||| |||||||||||| || |||||||| |||||    
T  15614779 tagttgggatgtcggtgttccctcttgatgcttgtcctctctccctgtttagcaaaaaaaaa 15614840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 2259433 - 2259390
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctcc 331  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
T  2259433 tagttgggatgtcggtgtttcctcttgatgcatgtccactctcc 2259390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 35341930 - 35341991
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    |||||||||||||| || |  |||||||||| ||||||||||||||||||| |||| |||||    
T  35341930 tagttgggatgtcgatgatgactcttgatgcctgtcctctctccttgcttaccaaaaaaaaa 35341991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 31329313 - 31329249
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaataa 352  Q
    ||||||| |||||| || | ||||||||||| |||||||||||||||||||  ||| ||||||||    
T  31329313 tagttggaatgtcgatgatgcctcttgatgcctgtcctctctccttgcttataaaaaaaaaataa 31329249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 14480314 - 14480365
Alignment:
Q  301 ggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaataa 352  Q
    |||| ||||||||||||||||||||||||||| ||||| | || ||||||||    
T  14480314 ggtgcttcctcttgatgcatgtcctctctcctagcttatccaaaaaaaataa 14480365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 25538844 - 25538887
Alignment:
Q  289 agttgggatgtcggtggttcctcttgatgcatgtcctctctcct 332  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||    
T  25538844 agttggaatgtcggtgtttcctcttgatgcatgtcctatctcct 25538887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 24122980 - 24123042
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaat 350  Q
    |||||| |||||||||| ||||||||||||  |||||  ||||||||| ||||||| ||||||    
T  24122980 tagttgagatgtcggtgtttcctcttgatgtctgtcccttctccttgcctagcaaaaaaaaat 24123042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 4120561 - 4120622
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||||||||||||| | ||||||||||  | |||||||||| || |||||||| |||||    
T  4120561 tagttgggatgtcggtgttccctcttgatgtttatcctctctccctgtttagcaaaaaaaaa 4120622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 5784521 - 5784460
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||| |||||| || | ||||||||||| ||||| ||||||||||||| |||| |||||    
T  5784521 tagttggaatgtcgatgatgcctcttgatgcctgtccactctccttgcttatcaaaaaaaaa 5784460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 24765537 - 24765501
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcc 324  Q
    ||||||||||||||||  |||||||||||||||||||    
T  24765537 tagttgggatgtcggtatttcctcttgatgcatgtcc 24765501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 35631651 - 35631565
Alignment:
Q  96 tataaatatttacagcataaactatgattgatt-tctgtcgacaactttgttacactaaa-ttatcaaatttcataatgaatatgtt 180  Q
    |||||||||| |||  ||||| ||||||||| | | | |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  35631651 tataaatattcacaagataaagtatgattgaatatttctcgagaactttgttacactaaagttatcaaatttcataatgaatatgtt 35631565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 1633346 - 1633393
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgc 335  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||    
T  1633346 tagttggattgtcggtgtttcctcttgatgcatgtcctctctccttgc 1633393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 28780223 - 28780265
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctc 330  Q
    |||||||||||||| || | |||||||||||||||||||||||    
T  28780223 tagttgggatgtcgatgttgcctcttgatgcatgtcctctctc 28780265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 29216648 - 29216709
Alignment:
Q  291 ttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaataaa 353  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||| |||| |||||||||    
T  29216648 ttgggatgtcgatgatgcctcttgatgcatgtcctctctccttgcttatcaaa-aaaaataaa 29216709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 29329947 - 29330008
Alignment:
Q  291 ttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaataaa 353  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||| |||| |||||||||    
T  29329947 ttgggatgtcgatgatgcctcttgatgcatgtcctctctccttgcttatcaaa-aaaaataaa 29330008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 12102851 - 12102906
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaa 343  Q
    |||||||||||||| || | |||||||||| |||||||||||||||||||| ||||    
T  12102851 tagttgggatgtcgatgttgcctcttgatgtatgtcctctctccttgcttatcaaa 12102906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 22169999 - 22169941
Alignment:
Q  291 ttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||||| | || | ||||||||||| ||||||||||||||||||| |||| |||||    
T  22169999 ttgggatgttgatgatgcctcttgatgcctgtcctctctccttgcttatcaaaaaaaaa 22169941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 40926497 - 40926436
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    |||||||||||||| || |||||| |||||||||||||  |||| |||||||| || |||||    
T  40926497 tagttgggatgtcgatgtttcctcctgatgcatgtccttactccctgcttagcgaaaaaaaa 40926436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 11416012 - 11415951
Alignment:
Q  287 ttagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaa 348  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||| ||||||| ||||    
T  11416012 ttagttgggatgtcggtgtttccttttgatgtttgtcctctctccttgcctagcaaaaaaaa 11415951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 37005934 - 37005893
Alignment:
Q  291 ttgggatgtcggtggttcctcttgatgcatgtcctctctcct 332  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  37005934 ttgggatgtcggtgcttcctcttgatgcatgtcctctctcct 37005893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 41068900 - 41068963
Alignment:
Q  289 agttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaataaa 353  Q
    |||||||||||||||| | |||| |||||| |||| ||||||| ||||||||||| |||||||||    
T  41068900 agttgggatgtcggtgttgcctcatgatgcctgtc-tctctccctgcttagcaaaaaaaaataaa 41068963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 322
Target Start/End: Complemental strand, 34657949 - 34657915
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgt 322  Q
    ||||||||||||||||| |||||||||||||||||    
T  34657949 tagttgggatgtcggtgtttcctcttgatgcatgt 34657915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 8667134 - 8667073
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||| |||||||| || | ||||||||||| ||||| ||||||||||||| |||| |||||    
T  8667134 tagttaggatgtcgatgttgcctcttgatgcctgtccactctccttgcttatcaaaaaaaaa 8667073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 10032124 - 10032063
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||||||||||||| ||||||||||||| |||||  ||||||||| ||||||| |||||    
T  10032124 tagttgggatgtcggtgtttcctcttgatgcctgtcccttctccttgcctagcaaaaaaaaa 10032063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 14986127 - 14986176
Alignment:
Q  290 gttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttag 339  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  14986127 gttgtgatgtcggtgtttcctcttgatgcatgtcctctctcattgcttag 14986176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 26505933 - 26505979
Alignment:
Q  297 tgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaa 343  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||||    
T  26505933 tgtcagtgtttcctcttgatgcatgtcctctctccttgcctagcaaa 26505979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 19088923 - 19088964
Alignment:
Q  295 gatgtcggtggttcctcttgatgcatgtcctctctccttgct 336  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  19088923 gatgtcagtgtttcctcttgatgcatgtcctctctccttgct 19088964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 10433239 - 10433283
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctcct 332  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||||    
T  10433239 tagttgggatgtcggtgcttcctcttgatgcttgtcctttctcct 10433283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 19054421 - 19054385
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcc 324  Q
    ||||||||||||||||| |||||||||||||||||||    
T  19054421 tagttgggatgtcggtgtttcctcttgatgcatgtcc 19054385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 2583116 - 2583065
Alignment:
Q  287 ttagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    ||||||||||||||| || | ||||||||||  |||||||||||||||||||    
T  2583116 ttagttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgctta 2583065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 16816270 - 16816227
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctcc 331  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||    
T  16816270 tagttgggatgttggtgtttcctcttgatgcatgtccactctcc 16816227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 20808793 - 20808742
Alignment:
Q  287 ttagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    ||||||||||||||| || |  |||||||||| |||||||||||||||||||    
T  20808793 ttagttgggatgtcgatgatgtctcttgatgcctgtcctctctccttgctta 20808742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 10423837 - 10423787
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    |||||||||||||| || | ||||||||||| ||||| |||||||||||||    
T  10423837 tagttgggatgtcgatgttgcctcttgatgcttgtccactctccttgctta 10423787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 27035888 - 27035838
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    |||||||||||||| || | ||||||||||| |||||||||||||| ||||    
T  27035888 tagttgggatgtcgatgatgcctcttgatgcttgtcctctctccttactta 27035838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 34528955 - 34528901
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaa 342  Q
    |||||||||||||| || |||||||||||||  || |||||||||||| ||||||    
T  34528955 tagttgggatgtcgctgtttcctcttgatgcccgttctctctccttgcctagcaa 34528901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 33064856 - 33064795
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    |||||||||||||| || |||| |||||||| |||||  |||||| |||||||||| |||||    
T  33064856 tagttgggatgtcgttgcttccccttgatgcctgtccaatctcctggcttagcaaaaaaaaa 33064795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 46391554 - 46391501
Alignment:
Q  296 atgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||| ||| |||||| |||||||||||||  |||||||||||||||| |||||    
T  46391554 atgtcagtgtttcctcctgatgcatgtccttactccttgcttagcaaaaaaaaa 46391501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 41574335 - 41574271
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaataa 352  Q
    |||||||||||| |||| ||||| ||||||  |||||| ||||||||| ||||||| || |||||    
T  41574335 tagttgggatgttggtgtttccttttgatgtctgtcctttctccttgcctagcaaaaaataataa 41574271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 1530 - 1483
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgc 335  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  1530 tagttgggatgtcggtgttgcctcttgatgcttgtcctctctccttgc 1483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 14366 - 14305
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    |||||||||||||| || | ||||||||||  ||||||||||||||||||| |||| |||||    
T  14366 tagttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgcttatcaaaaaaaaa 14305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 11456 - 11516
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaa 348  Q
    ||||||||||||||||| | ||||||||||  |||||||||||| || |||||||| ||||    
T  11456 tagttgggatgtcggtgttccctcttgatgtttgtcctctctccctgtttagcaaaaaaaa 11516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 583 - 633
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    ||||||| |||||| || | |||||||||||||||||||||||||| ||||    
T  583 tagttggaatgtcgatgatgcctcttgatgcatgtcctctctccttactta 633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 21262 - 21312
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    |||||||||||||| || | ||||||||||| ||||| |||||||||||||    
T  21262 tagttgggatgtcgatgatgcctcttgatgcctgtccactctccttgctta 21312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 16238 - 16288
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgctta 338  Q
    ||||||||||||||||| || |||||||| |||||||| |||||| |||||    
T  16238 tagttgggatgtcggtgctttctcttgatacatgtcctttctcctggctta 16288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 806 - 867
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcctctctccttgcttagcaaagaaaaa 349  Q
    ||||||||||||||||| | ||||||||||  |||| | |||| |||||||||||| |||||    
T  806 tagttgggatgtcggtgttgcctcttgatgtctgtcatttctcgttgcttagcaaaaaaaaa 867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 8034 - 7998
Alignment:
Q  288 tagttgggatgtcggtggttcctcttgatgcatgtcc 324  Q
    ||||||||||||||||  |||||||||||||||||||    
T  8034 tagttgggatgtcggtatttcctcttgatgcatgtcc 7998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University