View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15192_high_12 (Length: 401)
Name: NF15192_high_12
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 37 - 392
Target Start/End: Complemental strand, 16184388 - 16184033
Alignment:
| Q |
37 |
ctggattttcttcaaaggtgggaaccttatatttgtgatcaaatatagaagccacaatcaaagcaacaattccaccacctaatataccaaaaccttgcat |
136 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16184388 |
ctggattttcttcaaaggtaggaaccttatatttgtgatcaaatatagaagccacaatcaaagcaacaattccaccacctaagataccaaaaccttgcat |
16184289 |
T |
|
| Q |
137 |
agcaaaaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaacca |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16184288 |
ggcaaaaacagcagcaataaatgcacctctagtttttttgttagcatattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaacca |
16184189 |
T |
|
| Q |
237 |
agccaaaacctaaagaaacaaagtgttgccataacactttttggacttgatccaaaagagagtcctgaagcaactgaacaaaccaccatgagaataagtg |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16184188 |
agccaaaacctaaagaaacaaagtgttgccataacactctttggacttgatccaaaagagagtcctgaagcaactgaacaaaccaccatgagaataagtg |
16184089 |
T |
|
| Q |
337 |
ttaaaccatagacttttttccgaccaagtttgtcgccaagccaaccaaagaataat |
392 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16184088 |
ttaaaccatagacttttttcctaccaagtttgtcgccaagccaaccaaagaataat |
16184033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 16223787 - 16223423
Alignment:
| Q |
28 |
atgattcatctggattttcttcaaaggtgggaaccttatatttgtgatcaaatatagaagccacaatcaaagcaacaattccaccacctaatataccaaa |
127 |
Q |
| |
|
||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
16223787 |
atgatgcagctggattttcttcaaaggtaggaaccttatatttgtgatcaaatatagaagccacagtcaaagcaacaattccaccacctaagataccaaa |
16223688 |
T |
|
| Q |
128 |
accttgcatagcaaaaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgtagctgaaagagggtaatcaccaccaata |
227 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16223687 |
accttgcatggcaaaaacagcagcaataaatgcacctctagtttttttgttagcatattcagacatgattgtagctgaaagagggtaatcaccaccaata |
16223588 |
T |
|
| Q |
228 |
ccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttggacttgatccaaaagagagtcctgaagcaactgaacaaaccaccatga |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16223587 |
ccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactctttggacttgatccaaaagagagtcctgaagcaactgaacaaaccaccatga |
16223488 |
T |
|
| Q |
328 |
gaataagtgttaaaccatagacttttttccgaccaagtttgtcgccaagccaaccaaagaataat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16223487 |
gaataagtgttaaaccatagacttttttcctaccaagtttgtcgccaagccaaccaaagaataat |
16223423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 16174965 - 16175329
Alignment:
| Q |
28 |
atgattcatctggattttcttcaaaggtgggaaccttatatttgtgatcaaatatagaagccacaatcaaagcaacaattccaccacctaatataccaaa |
127 |
Q |
| |
|
||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16174965 |
atgatgcagctggattttcttcaaaggtaggaaccttatatttgtgatcaaatatagaaaccacaatcaaagcaacaattccaccacctaagataccaaa |
16175064 |
T |
|
| Q |
128 |
accttgcatagcaaaaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgtagctgaaagagggtaatcaccaccaata |
227 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16175065 |
accttgcatggcaaaaacagcagcaataaatgcacctctagtttttttgttagcatattcagacatgattgtagctgaaagagggtaatcaccaccaata |
16175164 |
T |
|
| Q |
228 |
ccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttggacttgatccaaaagagagtcctgaagcaactgaacaaaccaccatga |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
16175165 |
ccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactctttggacttgagccaaaagagagtcctgaagcaacagaacaaacaaccatga |
16175264 |
T |
|
| Q |
328 |
gaataagtgttaaaccatagacttttttccgaccaagtttgtcgccaagccaaccaaagaataat |
392 |
Q |
| |
|
||||||| || |||||||| |||||||| | || | |||||| ||||||||||||||||||||| |
|
|
| T |
16175265 |
gaataagagtcaaaccatatactttttttcttcccattttgtccccaagccaaccaaagaataat |
16175329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 42 - 388
Target Start/End: Complemental strand, 33109483 - 33109137
Alignment:
| Q |
42 |
ttttcttcaaaggtgggaaccttatatttgtgatcaaatatagaagccacaatcaaagcaacaattccaccacctaatataccaaaaccttgcatagcaa |
141 |
Q |
| |
|
||||||||| | || ||||| | ||||||||||||||| || ||| |||||||| |||| | ||||||| | | || ||||| ||||||||||||| |
|
|
| T |
33109483 |
ttttcttcataagtaggaacttgatatttgtgatcaaaagcagcagctacaatcaatgcaaatactccaccagccatgattccaaatccttgcatagcaa |
33109384 |
T |
|
| Q |
142 |
aaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagcca |
241 |
Q |
| |
|
| || ||||| ||||| || |||| | ||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33109383 |
acactgcagcgataaaagctcctcgcgtcttcttgttcgcatactcagacataattgtagcagaaagagggtaatcaccaccaattccaaaaccaagcca |
33109284 |
T |
|
| Q |
242 |
aaacctaaagaaacaaagtgttgccataacactttttggacttgatccaaaagagagtcctgaagcaactgaacaaaccaccatgagaataagtgttaaa |
341 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| |||||||| ||||||||| || ||||| || | |||||| | ||||| || ||||| |||| | |
|
|
| T |
33109283 |
aaacctgaagaaacaaagtgttgccatgacaccctttggactatttccaaaagatagacctgaggcgagcgaacaacctaccataagcataagggttata |
33109184 |
T |
|
| Q |
342 |
ccatagacttttttccgaccaagtttgtcgccaagccaaccaaagaa |
388 |
Q |
| |
|
||||| |||||||||| || | |||||| ||||||||||| ||||| |
|
|
| T |
33109183 |
ccataaacttttttccttcctaatttgtcaccaagccaaccgaagaa |
33109137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 314
Target Start/End: Complemental strand, 33115437 - 33115246
Alignment:
| Q |
123 |
ccaaaaccttgcatagcaaaaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgtagctgaaagagggtaatcaccac |
222 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||| | || || ||||| ||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
33115437 |
ccaaaaccttgcatagcgaaaacagccgctataaatgcaccacgagtctttttatttgcatactcagacatgatagtagctgaaagagggtaatcaccgc |
33115338 |
T |
|
| Q |
223 |
caataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttggacttgatccaaaagagagtcctgaagcaactgaa |
314 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||||||| || ||||||||| |||| ||| | ||||||||||| || ||||||| |||| |
|
|
| T |
33115337 |
caattccaaatccaagccagaacctgaagaaacaaagggtagccataacagttttgggatctttcccaaaagagagaccagaagcaagtgaa |
33115246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 30615885 - 30615961
Alignment:
| Q |
183 |
tattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaagaaacaaag |
259 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| || || ||||| ||||| |
|
|
| T |
30615885 |
tattcagacataattgtagcagaaagtggataatcaccaccaataccaaaaccaagccagaatctgaagaagcaaag |
30615961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 9699501 - 9699568
Alignment:
| Q |
183 |
tattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaa |
250 |
Q |
| |
|
|||||||||||||| || ||||| | |||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
9699501 |
tattcagacatgatggttgctgataaagggtagtctccaccaataccaaatccaagccaaaacctaaa |
9699568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 30620636 - 30620712
Alignment:
| Q |
183 |
tattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaagaaacaaag |
259 |
Q |
| |
|
||||||||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
30620636 |
tattcagacataattgttgcagaaagtggataatctccaccaataccgaaaccaagccagaatctgaagaagcaaag |
30620712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 37315753 - 37315911
Alignment:
| Q |
101 |
aacaattccaccacctaatataccaaaaccttgcatagcaaaaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgta |
200 |
Q |
| |
|
||||||||||||| | || || ||||| ||||||||||||||||| | ||| ||||| || || | || ||| |||||||||||||| || ||| |
|
|
| T |
37315753 |
aacaattccaccagccaaaattccaaacccttgcatagcaaaaaccgaagctataaacgcgccacgagtctttttgttggcatattcagacataatagta |
37315852 |
T |
|
| Q |
201 |
gctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaagaaacaaag |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
37315853 |
gctgaaagagggtaatcaccaccaataccaaaacctagccagaatctaaagaaacaaag |
37315911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 38893436 - 38893344
Alignment:
| Q |
189 |
gacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttgga |
281 |
Q |
| |
|
||||| || ||||| ||||| |||||||| |||||||||||||| ||||||||||| | ||||| ||||| |||||||| || |||||||| |
|
|
| T |
38893436 |
gacattatagtagccgaaagcgggtaatctccaccaataccaaacccaagccaaaaacggaagaagcaaagagttgccatgaccgtttttgga |
38893344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University