View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15192_high_19 (Length: 327)

Name: NF15192_high_19
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15192_high_19
NF15192_high_19
[»] chr1 (1 HSPs)
chr1 (18-310)||(34109628-34109922)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 34109922 - 34109628
Alignment:
Q  18 tgttatacacaaacaaaaaataactatatgtttcacgctcttagattatgaaaaatagttaactttttcaaaatattaataaaatgtaactttgtttttc 117  Q
    ||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34109922 tgttatatactaacaaaatataactatatgtttcacactcttagattatgaaaaatagttaattttttcaaaatattaataaaatgtaactttgtttttc 34109823  T
Q  118 aaattgtccctaacgagaacatgttatcagaagaataaaagaatatcgaagaaatttagnnnnnnnntaacactaaatataatagaagtagttaaagtat 217  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| ||||    
T  34109822 agattgtccctaacgagaacatgttatcagaagaataaaagaatatcgaagaaatttagaaaaaaaataacactaaatataatagaagtagttaacgtat 34109723  T
Q  218 gcttatgtttagaccattaaatata--annnnnnnngaaggaattaaatataattattttgttgcttatgttcaagatcacatgcaacatatctc 310  Q
    |||||||||||||||||||||||||            ||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  34109722 gcttatgtttagaccattaaatatatttattttttttaagaaattaaatataattattttgttgcttatgttcgagatcacatggaacatatctc 34109628  T

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