View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15192_high_20 (Length: 317)

Name: NF15192_high_20
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15192_high_20
NF15192_high_20
[»] chr5 (1 HSPs)
chr5 (11-302)||(42266768-42267057)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 42267057 - 42266768
Alignment:
Q  11 catcatcaaaaggcctactgcagtaaaatccgttgttatttcttcaaaatatgtcaacttcggcatcatattgacctttcatgctgacattgaagttctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42267057 catcatcaaaaggcctactgcagtaaaatccgttgttatttcttcaaaatatgtcaacttcggcatcatattgacctttcatgctgacattgaagttctt 42266958  T
Q  111 aagagatacttatgagaggtcgagaatactaaaaacgccataacaagaagcaaatcatctgagttacagcaaagtcgagcaccaacnnnnnnnnnncaca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||    
T  42266957 aagagatacttatgagaggtcgagaatactaaaaacgccataacaagaagcaaatcatctgagttacagcaaagtcgagcaccaa--aaaaaaaaacaca 42266860  T
Q  211 caatgtttgagattagtatgatcgaactattcaattgctttgacaaattcgatctcaacgagaaaaagaagatatactttgatgaaggaaat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42266859 caatgtttgagattagtatgatcgaactattcaattgctttgacaaatttgatctcaacgagaaaaagaagatatactttgatgaaggaaat 42266768  T

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