View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15192_high_24 (Length: 309)

Name: NF15192_high_24
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15192_high_24
NF15192_high_24
[»] chr7 (4 HSPs)
chr7 (1-204)||(5103679-5103877)
chr7 (214-299)||(5103519-5103604)
chr7 (85-196)||(29229675-29229786)
chr7 (146-194)||(34427570-34427618)
[»] chr2 (3 HSPs)
chr2 (88-201)||(30429090-30429202)
chr2 (84-148)||(9733541-9733605)
chr2 (167-208)||(9733551-9733592)
[»] chr5 (2 HSPs)
chr5 (88-194)||(16829208-16829313)
chr5 (95-191)||(35463965-35464061)
[»] chr4 (4 HSPs)
chr4 (89-201)||(7277438-7277550)
chr4 (136-196)||(21861077-21861137)
chr4 (136-196)||(21916940-21917000)
chr4 (95-195)||(10304669-10304769)
[»] chr1 (3 HSPs)
chr1 (84-201)||(8174117-8174234)
chr1 (85-190)||(29853196-29853301)
chr1 (122-201)||(47154689-47154768)
[»] chr6 (1 HSPs)
chr6 (74-152)||(674121-674199)
[»] chr3 (6 HSPs)
chr3 (122-208)||(11534795-11534881)
chr3 (88-154)||(26331223-26331289)
chr3 (84-201)||(26331239-26331355)
chr3 (85-152)||(55121176-55121243)
chr3 (167-208)||(55121188-55121229)
chr3 (90-142)||(25108987-25109039)
[»] chr8 (2 HSPs)
chr8 (167-208)||(24259068-24259109)
chr8 (78-154)||(38779301-38779376)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5103877 - 5103679
Alignment:
Q  1 ttctatcaaattatggtcaactcatttatgtatcctcgaccagcagtcaaatattaatgcctcacgatacacatatatattttctccggtcacgtttata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| ||||| |||| ||||||    
T  5103877 ttctatcaaattatggtcaactcatttatgtatcctcgaccagcagtcaaatattaatccctcacgatacacat--atatttcctccgatcacatttata 5103780  T
Q  101 agacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgtgttt 200  Q
    |||||||||||| |||   |||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||| || | |||    
T  5103779 agacaaaaacaacttt---tgttcatcgaataatcaatgtatctggtctatataaatgttagagacattagttattgaatgaaccaaaaaagttattttt 5103683  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 5103604 - 5103519
Alignment:
Q  214 tccataaatttgccgtctctaacatttaattaacgatggaattagaaactaattttgtttttctctctctattattccgtcttcat 299  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5103604 tccataaatttgccgtctctaacatttaattaacgaaggaattagaaactaattttgtttttctctctctattattccgtcttcat 5103519  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 29229675 - 29229786
Alignment:
Q  85 tccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaac 184  Q
    ||||||||| | ||||||  |||||||| ||||||  |||||  || ||| |||| || ||||||||||| |||||||| | |||||||||| |||||||    
T  29229675 tccggtcacatatataagcaaaaaacaactttttagattcattaaacaactaatgcatttggtctatatataggtcagatacattagttattcaatgaac 29229774  T
Q  185 ctaaaaaattgt 196  Q
    ||||||| ||||    
T  29229775 ctaaaaagttgt 29229786  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 34427570 - 34427618
Alignment:
Q  146 gtctatataaaggtcagagaaattagttattgaatgaacctaaaaaatt 194  Q
    ||||||||| |||||||| | |||||||||||||||||| |||||||||    
T  34427570 gtctatatataggtcagatatattagttattgaatgaacttaaaaaatt 34427618  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 30429202 - 30429090
Alignment:
Q  88 ggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaaccta 187  Q
    |||||| |||||||| |||||| |||| |||| ||| || ||||||| ||||||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  30429202 ggtcacatttataag-caaaaaaaattgtttaggtttattgaataactaatgtatctagtctatataaaggtcagatacattaattattgaatgaaccta 30429104  T
Q  188 aaaaattgtgtttt 201  Q
    |||| |||| ||||    
T  30429103 aaaagttgtttttt 30429090  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 9733605 - 9733541
Alignment:
Q  84 ctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtc 148  Q
    |||||||||| |||||||   ||||||||||||||| |||||| ||||||| |||||||| ||||    
T  9733605 ctccggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatccggtc 9733541  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 9733551 - 9733592
Alignment:
Q  167 attagttattgaatgaacctaaaaaattgtgttttctttata 208  Q
    |||||||||| ||||||||||||||||||| |||| ||||||    
T  9733551 attagttattcaatgaacctaaaaaattgttttttgtttata 9733592  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 16829208 - 16829313
Alignment:
Q  88 ggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaaccta 187  Q
    |||||| |||||||| |||||| || |||||| |||||| ||||| | ||||||||| || ||||||||||||||| | ||||||||||  |||||||||    
T  16829208 ggtcacatttataag-caaaaataactttttaagttcattgaatatctaatgtatctagtttatataaaggtcagatacattagttattcgatgaaccta 16829306  T
Q  188 aaaaatt 194  Q
    |||||||    
T  16829307 aaaaatt 16829313  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 35463965 - 35464061
Alignment:
Q  95 tttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaa 191  Q
    ||||||||  ||||| ||||||||| |||||| ||||||| |||||||| |||||||||| | || ||| | ||||| || | || |||||||||||    
T  35463965 tttataagcaaaaaataattttttaggttcattgaataactaatgtatccggtctatatatatgttagatacattagctactcaaagaacctaaaaa 35464061  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 7277550 - 7277438
Alignment:
Q  89 gtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaa 188  Q
    ||||| ||||||||  |||||| | |||||| ||| || |||||||  ||||||||| |||||||||| |||||| | |||||||||| |||||||||||    
T  7277550 gtcacatttataagcgaaaaacgactttttaagtttattgaataactcatgtatctgatctatataaaagtcagatacattagttattcaatgaacctaa 7277451  T
Q  189 aaaattgtgtttt 201  Q
    ||| |||| ||||    
T  7277450 aaagttgtttttt 7277438  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 21861137 - 21861077
Alignment:
Q  136 aatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgt 196  Q
    ||||||||||||||||||||| |||||| | |||| ||||| |||| | ||||||||||||    
T  21861137 aatgtatctggtctatataaaagtcagatacattaattattcaatgtatctaaaaaattgt 21861077  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 21917000 - 21916940
Alignment:
Q  136 aatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgt 196  Q
    ||||||||||||||||||||| |||||| | |||| ||||| |||| | ||||||||||||    
T  21917000 aatgtatctggtctatataaaagtcagatacattaattattcaatgtatctaaaaaattgt 21916940  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 10304669 - 10304769
Alignment:
Q  95 tttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaatt 194  Q
    ||||||||  ||||| || |||| ||||||||  ||||||||||| | | ||||||||||  ||||| | | |||||||||| ||||||  |||||||||    
T  10304669 tttataagcaaaaaataacttttcatgttcattaaataaccaatgaagccggtctatatatcggtcatatacattagttatttaatgaatttaaaaaatt 10304768  T
Q  195 g 195  Q
    |    
T  10304769 g 10304769  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 8174234 - 8174117
Alignment:
Q  84 ctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaa 183  Q
    |||||||||| ||||||||  ||| |||| ||||||| ||||| |||| |  |||||||||||||||||||||  || || | | ||| |||| ||||||    
T  8174234 ctccggtcacatttataagcaaaacacaactttttatattcattgaatgattaatgtatctggtctatataaaaatcggatacaatagatattcaatgaa 8174135  T
Q  184 cctaaaaaattgtgtttt 201  Q
    ||||||||||||| ||||    
T  8174134 cctaaaaaattgtttttt 8174117  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 29853301 - 29853196
Alignment:
Q  85 tccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaac 184  Q
    ||||||||  ||||||||  ||||  || |||||||||||||  |||||  |||||||  | |||||||| | |||||| | ||||||||||||||||||    
T  29853301 tccggtcatatttataagtaaaaattaactttttatgttcatttaataaataatgtattcgatctatatataagtcagatacattagttattgaatgaac 29853202  T
Q  185 ctaaaa 190  Q
    ||||||    
T  29853201 ctaaaa 29853196  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 47154689 - 47154768
Alignment:
Q  122 ttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgtgtttt 201  Q
    ||||| ||||||||| ||||||  ||||||||| ||| |||| | |||| ||||| |||||||||||||| |||| ||||    
T  47154689 ttcattgaataaccactgtatccagtctatatataggccagatacattatttattaaatgaacctaaaaagttgtttttt 47154768  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 674199 - 674121
Alignment:
Q  74 tatatattttctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctata 152  Q
    |||||| ||||||||||||| ||||||||  |||||||||||||||  ||||| ||||||| ||| ||| |||||||||    
T  674199 tatatactttctccggtcacatttataagcaaaaaacaattttttagattcattgaataactaatatatttggtctata 674121  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 11534795 - 11534881
Alignment:
Q  122 ttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaacctaaaaaattgtgttttctttata 208  Q
    ||||| ||||| | ||||||| ||||||||||| |||||||| | ||||  |||| |||||| |||||||||||| |||| ||||||    
T  11534795 ttcattgaatacctaatgtatatggtctatatataggtcagatacattaaatattcaatgaatctaaaaaattgtattttgtttata 11534881  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 26331223 - 26331289
Alignment:
Q  88 ggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatata 154  Q
    |||||| ||||||||  |||||||||||| || |||||| |||| || |||||||||||||||||||    
T  26331223 ggtcacatttataagcaaaaaacaattttctaggttcattgaatgactaatgtatctggtctatata 26331289  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 26331355 - 26331239
Alignment:
Q  84 ctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatataaaggtcagagaaattagttattgaatgaa 183  Q
    |||||||||| ||||||||  |||||||| |||||| |||||| |||  || ||||| | ||||||||||| ||  |||| | |||||| ||| ||||||    
T  26331355 ctccggtcacatttataagcaaaaaacaactttttaggttcattgaaagactaatgttt-tggtctatatatagaccagatacattagtcattcaatgaa 26331257  T
Q  184 cctaaaaaattgtgtttt 201  Q
    |||| |||||||| ||||    
T  26331256 cctagaaaattgtttttt 26331239  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 55121176 - 55121243
Alignment:
Q  85 tccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctata 152  Q
    ||||||||| |||||||   ||||||||||||||| |||||| ||||||| ||||||| |||| ||||    
T  55121176 tccggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatttggtttata 55121243  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 55121229 - 55121188
Alignment:
Q  167 attagttattgaatgaacctaaaaaattgtgttttctttata 208  Q
    |||||||||| ||||||||||||||||||| |||| ||||||    
T  55121229 attagttattcaatgaacctaaaaaattgttttttgtttata 55121188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 25109039 - 25108987
Alignment:
Q  90 tcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtat 142  Q
    |||| ||||||||  ||||| |||||||||||||||| ||||||| |||||||    
T  25109039 tcacatttataagtaaaaaataattttttatgttcattgaataactaatgtat 25108987  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 24259109 - 24259068
Alignment:
Q  167 attagttattgaatgaacctaaaaaattgtgttttctttata 208  Q
    ||||||||||||||||| |||||||||||| ||||| |||||    
T  24259109 attagttattgaatgaatctaaaaaattgtattttccttata 24259068  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 38779376 - 38779301
Alignment:
Q  78 tattttctccggtcacgtttataagacaaaaacaattttttatgttcatcgaataaccaatgtatctggtctatata 154  Q
    ||||||||||||| || ||||||||| ||||||||||||||| ||| ||  |||||  ||||||||| || ||||||    
T  38779376 tattttctccggttacatttataaga-aaaaacaattttttaagtttattaaataattaatgtatctagtttatata 38779301  T

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