View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_high_3 (Length: 591)
Name: NF15192_high_3
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 38 - 578
Target Start/End: Original strand, 52582858 - 52583398
Alignment:
| Q |
38 |
ggaaaggggtagtttttggataaggaattacttggtttttggttaaacctgtttgggaagccaggattaacttctcagaatcattaggatagctgcaaaa |
137 |
Q |
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| T |
52582858 |
ggaaaggggtagtttttggataaggaattacttggtttttggttaaacctgtttgggaagccaggattaacttctcagaatcattaggatagctgcaaaa |
52582957 |
T |
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| Q |
138 |
atcagacatcaaattagcatttcattaataagacaagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgc |
237 |
Q |
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| T |
52582958 |
atcagacatcaaattagcatttcattaataagacaagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgc |
52583057 |
T |
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| Q |
238 |
tcaaagagccaagcacgaagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttgga |
337 |
Q |
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| T |
52583058 |
tcaaagagccaagcacgaagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttgga |
52583157 |
T |
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| Q |
338 |
gagacattctagtctgtctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctc |
437 |
Q |
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| T |
52583158 |
gagacattctagtctgtctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctc |
52583257 |
T |
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| Q |
438 |
agcatttatttgggacattatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacct |
537 |
Q |
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| T |
52583258 |
agcatttatttgggacattatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacct |
52583357 |
T |
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| Q |
538 |
gctatcatttcaaaagatgatactacttcttccatttgatg |
578 |
Q |
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| T |
52583358 |
gctatcatttcaaaagatgatactacttcttccatttgatg |
52583398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 52591061 - 52591105
Alignment:
| Q |
218 |
cttacggatgaagaaagtgctcaaagagccaagcacgaagaattg |
262 |
Q |
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| T |
52591061 |
cttacggattaagaaaatgttcaaagagccaagcacgaagtattg |
52591105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 43242984 - 43242935
Alignment:
| Q |
238 |
tcaaagagccaagcacgaagaattgctacagatgtttcaggtaaccctct |
287 |
Q |
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| T |
43242984 |
tcaaagagccaagcacgaagaacagatacagatctttcaggtaatcctct |
43242935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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