View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15192_high_38 (Length: 243)

Name: NF15192_high_38
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15192_high_38
NF15192_high_38
[»] chr4 (2 HSPs)
chr4 (18-230)||(4228473-4228688)
chr4 (172-230)||(47597429-47597487)
[»] chr6 (1 HSPs)
chr6 (172-228)||(1222819-1222875)
[»] chr3 (4 HSPs)
chr3 (172-228)||(54812087-54812143)
chr3 (172-228)||(46428860-46428916)
chr3 (172-221)||(42794797-42794846)
chr3 (180-230)||(43912099-43912149)
[»] chr1 (2 HSPs)
chr1 (172-228)||(22065040-22065096)
chr1 (184-238)||(11531529-11531583)
[»] chr7 (2 HSPs)
chr7 (172-228)||(24468804-24468860)
chr7 (172-228)||(24473752-24473808)
[»] chr5 (3 HSPs)
chr5 (172-228)||(18934357-18934413)
chr5 (172-221)||(4560155-4560204)
chr5 (180-218)||(18883718-18883756)
[»] chr8 (2 HSPs)
chr8 (172-223)||(44146013-44146064)
chr8 (180-227)||(38560465-38560512)
[»] chr2 (2 HSPs)
chr2 (172-223)||(17290338-17290389)
chr2 (172-218)||(9004749-9004795)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 4228688 - 4228473
Alignment:
Q  18 gtaaggataagagtttctaggatagataattaaagtcacttttaaatgatttttccgttaaaaaacattacaattttgattaaattttgtaaactactta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4228688 gtaaggataagagtttctaggatagataattaaagtcacttttaaatgatttttccgttaaaaaacattacaattttgattaaattttgtaaactactta 4228589  T
Q  118 tcaagagctaatttaactgattctaatgaataatggaagctaca---nnnnnnnnnnggtacaatagagggcaaagcccaaaagaaaagaaactacgaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||| ||||||||||||||||||||||    
T  4228588 tcaagagctaatttaactgattctaatgaataatggaagctacaatttttttttttgggtacaatagagggcaaagctcaaaagaaaagaaactacgaaa 4228489  T
Q  215 ttaaccggatattctt 230  Q
    ||||||||||||||||    
T  4228488 ttaaccggatattctt 4228473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 47597429 - 47597487
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattctt 230  Q
    ||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  47597429 ggtacaaaagagggcaaagtccaagagaaaagaaactacgaaattaaccggacattctt 47597487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 1222819 - 1222875
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 228  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  1222819 ggtacaatagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattc 1222875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 54812087 - 54812143
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 228  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  54812087 ggtacaatagagggcaaagcccaaaagaaaagaaactgcgaaattaaccggacattc 54812143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 46428916 - 46428860
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 228  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  46428916 ggtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaacggacattc 46428860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 42794846 - 42794797
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccg 221  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  42794846 ggtacaaaagagggcaaagcccaggagaaaagaaactacgaaattaaccg 42794797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 43912099 - 43912149
Alignment:
Q  180 agagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattctt 230  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||| ||||||    
T  43912099 agagggcaaaacccaagagaaaagaaactacgaaattaactggacattctt 43912149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 22065040 - 22065096
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 228  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  22065040 ggtacaatagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattc 22065096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 11531583 - 11531529
Alignment:
Q  184 ggcaaagcccaaaagaaaagaaactacgaaattaaccggatattcttcgacatgc 238  Q
    |||||||| ||| | |||||||||||||||||||| |||| |||||| |||||||    
T  11531583 ggcaaagctcaagacaaaagaaactacgaaattaatcggacattcttagacatgc 11531529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 24468860 - 24468804
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 228  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  24468860 ggtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattc 24468804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 24473808 - 24473752
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 228  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  24473808 ggtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattc 24473752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 18934413 - 18934357
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 228  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  18934413 ggtacaatagagggcaaagtccaagagaaaagaaactacgaaattaaccggacattc 18934357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 4560155 - 4560204
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccg 221  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  4560155 ggtacaaaagagggcaaatcccaagagaaaagaaactacgaaattaaccg 4560204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 18883756 - 18883718
Alignment:
Q  180 agagggcaaagcccaaaagaaaagaaactacgaaattaa 218  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  18883756 agagggcaaagtccaagagaaaagaaactacgaaattaa 18883718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 44146064 - 44146013
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgga 223  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  44146064 ggtacaatagagggcaaagcccaagagaaaagaaattacgaaattaaccgga 44146013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 38560465 - 38560512
Alignment:
Q  180 agagggcaaagcccaaaagaaaagaaactacgaaattaaccggatatt 227  Q
    ||||||||||   ||| |||||||||||||||||||||||||||||||    
T  38560465 agagggcaaaattcaagagaaaagaaactacgaaattaaccggatatt 38560512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 17290389 - 17290338
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgga 223  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  17290389 ggtacaatagagggcaaagtccaagagaaaagaaactacgaaattaaccgga 17290338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 9004795 - 9004749
Alignment:
Q  172 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaa 218  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  9004795 ggtacaatagagggcaaagtccaagagaaaagaaactatgaaattaa 9004749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University