View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_high_40 (Length: 240)
Name: NF15192_high_40
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 35685057 - 35685266
Alignment:
| Q |
18 |
atgtgcttcattgtcttaagttttggactagaacatcatcctcaacctagannnnnnnctatcacaaaaatgctaatactccatttcactaggtaaggat |
117 |
Q |
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| T |
35685057 |
atgtgcttcattgtcttaagttttggactagaacatcatcctcaacctagatttttttctatcacaaaaatgctaatgctccatttcacaagctatggat |
35685156 |
T |
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| Q |
118 |
aataataacagtaaggatatgctatattatttctttgcgaatacattatgatgtaatttcataaggtttaaaaacctagggtacaagtacaatgatcttt |
217 |
Q |
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| T |
35685157 |
aataataacagtaaggatatgctatattatttctttgtgaatacattatgatgtaatttcataaggtttaaaaacctagggtacaagtacaatgatcttt |
35685256 |
T |
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| Q |
218 |
gacatgtcct |
227 |
Q |
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|||||||||| |
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| T |
35685257 |
gacatgtcct |
35685266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 35679970 - 35680038
Alignment:
| Q |
106 |
ctaggtaaggataataataacagtaaggatatgctatattatttctttgcgaatacattatgatgtaat |
174 |
Q |
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| T |
35679970 |
ctaggtaaggataataataacattaaggatatgctatattatttctttgtgagtacattatgatgtaat |
35680038 |
T |
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