View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_high_42 (Length: 238)
Name: NF15192_high_42
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 16006495 - 16006713
Alignment:
| Q |
4 |
tgcatttaagccaaaaaa-ttatatattttttctttaaattacaaattatttagttttaaacctttgtgacattggattatacaaagtgatttgaagatt |
102 |
Q |
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| T |
16006495 |
tgcatttaagtcaaaaaaattatatattttttctttaaattacaaattatttatttttaaacctttgtgacattggattatacaaagtgatttgaagaat |
16006594 |
T |
|
| Q |
103 |
attt-atttttagatctttatggtatctgaccatataaaatgatattttaatatatttatgttcttaactagtgtctaaagacaatagttagcatttttc |
201 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
16006595 |
attttatttttagatctttatggtatctgaccatacaaaatgatattttaatatatttatcttcttaattagtgtctaaagacaatagttagcatttttc |
16006694 |
T |
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| Q |
202 |
aaattaaaatagatgattc |
220 |
Q |
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||||||||||||||||||| |
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| T |
16006695 |
aaattaaaatagatgattc |
16006713 |
T |
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