View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_high_6 (Length: 457)
Name: NF15192_high_6
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 28179809 - 28179481
Alignment:
| Q |
18 |
ataatgtaccagaccttatagaagctgctatagggttttctaataaacttgaacaatcggcagagctctctgaaagaggggagcttgatcgaggattgag |
117 |
Q |
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| T |
28179809 |
ataatgtaccagaccttatagaagctgctatagggttttctaataaacttgaacaatcggcagagctctctgaaagaggggagcttgatcgaggattgag |
28179710 |
T |
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| Q |
118 |
gattctatgataaatttcgtacttttattctgagaacatttaaatatcttccctgattgctgatttatatat--------atatgtgatggctggtaatn |
209 |
Q |
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| T |
28179709 |
gattctatgataaatttcgtacttttattctgagaacatttaaatatcttccctgattgctgatttatatatatatatatatatgtgatggctggtaata |
28179610 |
T |
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| Q |
210 |
nnnnnnnnctcaattttactagcagtttatgagcttacggttctacattgattgagccttgaatactataaatctaatagaagatcaaattagttggtag |
309 |
Q |
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| T |
28179609 |
aaaaaaaactcaattttactagcagtttacgagcttacggttctacattgattgagccttgaatactataaatctaatagaagatcaaattagttggtag |
28179510 |
T |
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| Q |
310 |
tgaaaataattgcatgaatgtattcattc |
338 |
Q |
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| T |
28179509 |
tgaaaataattgcatgaatgtattcattc |
28179481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 276 - 442
Target Start/End: Complemental strand, 30127104 - 30126942
Alignment:
| Q |
276 |
tataaatctaatagaagatcaaattagttggtagtgaaaataattgcat--gaatgtattcattctaacagcatgagtgtatgacacatgtggg--agaa |
371 |
Q |
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| T |
30127104 |
tataaatctaatcgaaaatcatattagttggtagtgaaaataattacatatgaatgtattcattctaacag--------tttgacacatgtgggtgagaa |
30127013 |
T |
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| Q |
372 |
actgcatcatggggatgacatagtgaaaacggacactcaaatggctggaacagaagttccaagccagagtt |
442 |
Q |
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| T |
30127012 |
actgcttcacggggataacatagtgaaaacggacactcaaatggctggaacaaaagttccaagccagagtt |
30126942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 442
Target Start/End: Complemental strand, 30117546 - 30117382
Alignment:
| Q |
276 |
tataaatctaatagaagatcaaat--tagttggtagtgaaaataattgcat--gaatgtattcattctaacagcatgagtgtatgacacatgtggg--ag |
369 |
Q |
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| T |
30117546 |
tataaatctaatcgaaaatcatatattagttggtagtgaaaataattacatatgaatgtattcattctaat--------tgtttgacacatgtgggtgag |
30117455 |
T |
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| Q |
370 |
aaactgcatcatggggatgacatagtgaaaacggacactcaaatggctggaacagaagttccaagccagagtt |
442 |
Q |
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| T |
30117454 |
aaactgcttcacggggataacatagtgaaaacggacactcaaatggctggaacaaaagttccaagccagagtt |
30117382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 30134617 - 30134528
Alignment:
| Q |
352 |
gtatgacacatgtgggaga--aactgcatcatggggatgacatagtgaaaacggacactcaaatggctggaacagaagttccaagccaga |
439 |
Q |
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| T |
30134617 |
gtatgacacaagtgggagagcaaccgggtcatggggaagacatagtgaaaacggacccccatatgtctggaacagaagttccaagccaga |
30134528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 30135188 - 30135120
Alignment:
| Q |
119 |
attctatgataaatttcgtacttttattctgagaacatttaaatatcttccctgattgctgatttatatat |
189 |
Q |
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||||||||||||||||| || |||| || |||||||||||||||| || ||| ||||||||||||||||| |
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| T |
30135188 |
attctatgataaatttcatatttttgtt--gagaacatttaaatatttttcctcattgctgatttatatat |
30135120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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