View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_1 (Length: 775)
Name: NF15192_low_1
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 620; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 13 - 758
Target Start/End: Complemental strand, 10560811 - 10560070
Alignment:
| Q |
13 |
caaagggatatagcctaaaataggtgaaagaaaaatgaagcaattgttttcttttaaacatgacacttcgacattgggcaagtttttgcaagtgctcttg |
112 |
Q |
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| T |
10560811 |
caaagggatatagcctaaaataggtgaaagaaaaatgaagcaattgttttcttttaaacatgacacttcgacattgggcaagtttttgcaagtgctcttg |
10560712 |
T |
|
| Q |
113 |
atcaacaccttacaaaatttg-----aactacaagcactcatatttcgaggcaatataataatataagttcatcttaatgcattgctacaaaaaataaat |
207 |
Q |
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|||||||||||| |||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10560711 |
atcaacacctta--aaatgtgtatataattacaagcactcatatttcgaggcaatataataatataagttcatcttaatgtattgctacaaaaaataaat |
10560614 |
T |
|
| Q |
208 |
caaattaatatattgtcataagtatagtgaagcacacaaagagaatgtaaactcacccatcatctatgaagcactgtcacatgaataattgaatgtaatg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10560613 |
caaattaatatattgtcataagtatagtgaagcacacaaagagaatgtaaactcacccatcatctatgaagcactgtcacataaataattgaatgtaatg |
10560514 |
T |
|
| Q |
308 |
tccacatgtgttggtcaaagacactaacacgtaccgtaccagatatcaagcacgcttcaatctgaaatcttaacgctatatactacataagaattcataa |
407 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10560513 |
tccacatgtgttggtcaaagacactaacacgtacc-----agacatcaagcacacttcaatctgaaatcttaacgctatatactacataagaattcataa |
10560419 |
T |
|
| Q |
408 |
atgttcctttggtacagacttagttagaaacaaataaactgatccattgcatatcagtcatacttataaacatcatgcttgattcataatatttcatact |
507 |
Q |
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| T |
10560418 |
atgttcctttagtacagatttagttagaaacaaataaactgatccattgcatatcagtcatacttataaacatcatgcttgattcataatatttcatact |
10560319 |
T |
|
| Q |
508 |
tagaaaaacgaaataagcaaatgatctccaaattaacactcaagaagaccaatgattatgattccaaattggtgaattgagtttcaaatctttaatggcc |
607 |
Q |
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| T |
10560318 |
tagaaaaacgaaataagcaaatgatctccaaattaacactcaagaagaccaat------gattccaaattggtgaattgagtttcaaatctttaatggcc |
10560225 |
T |
|
| Q |
608 |
----tattgtggtccagttgtgagactttcataatatgatatttcttctgttctctgcacattttgggaactaaagggaatttataatgtagcatgacag |
703 |
Q |
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| T |
10560224 |
tatatattgtggtccagctgtgagactttcataatatgatatttcttctgttctctgcacattttgggaactaaagggaatttataatgtagcatgacag |
10560125 |
T |
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| Q |
704 |
agtggagcatgcgacaaaagtattgataatataacaagtccagtattgcattcat |
758 |
Q |
| |
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| T |
10560124 |
agtggagcatgtgacaaaagtattgataatataataagtccagtattgcattcat |
10560070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 717 - 759
Target Start/End: Original strand, 9842989 - 9843031
Alignment:
| Q |
717 |
acaaaagtattgataatataacaagtccagtattgcattcatt |
759 |
Q |
| |
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| T |
9842989 |
acaaaaatattgataatataataagtccactattgcattcatt |
9843031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 26159132 - 26159202
Alignment:
| Q |
53 |
caattgttttcttttaaacatgacacttcgacattgggcaagtttttgcaagtgctcttgatcaacacctta |
124 |
Q |
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| T |
26159132 |
caattgttttcttttaaacat-acacttggacactgggcaagtgtttgcaagtgctcttgatcaacccctta |
26159202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 55780962 - 55780998
Alignment:
| Q |
37 |
tgaaagaaaaatgaagcaattgttttcttttaaacat |
73 |
Q |
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| T |
55780962 |
tgaaagaaaaatgaagcaattgttttcttttaaacat |
55780998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 55845142 - 55845178
Alignment:
| Q |
37 |
tgaaagaaaaatgaagcaattgttttcttttaaacat |
73 |
Q |
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| T |
55845142 |
tgaaagaaaaatgaagcaattgttttcttttaaacat |
55845178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 19852309 - 19852345
Alignment:
| Q |
37 |
tgaaagaaaaatgaagcaattgttttcttttaaacat |
73 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
19852309 |
tgaaagaaaaatgaagcaattgttttcttttaaacat |
19852345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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