View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_10 (Length: 437)
Name: NF15192_low_10
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 132 - 423
Target Start/End: Complemental strand, 51933029 - 51932737
Alignment:
| Q |
132 |
aggacaaaaagctattatatgtcaattcaggaaaaacatactaaatgtagtgtagcttaaagaaataggtaatcaactttttgctttcactagacaaatt |
231 |
Q |
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| T |
51933029 |
aggacaaaaagctattatatgtcaattcaggaaaaacatactaaatgtagtgtagcttaaagaaataggtaatcaactttttgctttcactagacaaatt |
51932930 |
T |
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| Q |
232 |
nnnnnnngtttatcaattcagtgttctatttgaattgccttttttgggcagggg-tgtaaagtacataaacagaaacttcttgggagtaaaggagaccaa |
330 |
Q |
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| T |
51932929 |
aaaaaaagtttatcaattcagtgttctatttaaattgccttttttgggcagggggtgtaaagtacataaacagaaacttcttgggagtaaaggagaccaa |
51932830 |
T |
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| Q |
331 |
cttaaaaaactcataattgatgaaccaattctattaaaacaaaacacgcttgcaagtggagaagaacaactcctagtaaaaacccagtgggat |
423 |
Q |
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| T |
51932829 |
cttaaaaaactcataattgatgaaccaattctattaaaacaaaacacgcttgcaagtggagaagaacaactcctagtaaaaacccagtgggat |
51932737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 51933147 - 51933065
Alignment:
| Q |
18 |
tatcccacatagcggcagtttttacttgacctcatgtaaactatagtatgaatcaaggcaaacttcaaattacaatcaagcat |
100 |
Q |
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| T |
51933147 |
tatcccgcatagcggcagtttttacttgacctcatgtaaactatagtatgaatcaaggcaaacttcaaattacaataaagcat |
51933065 |
T |
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