View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_11 (Length: 430)
Name: NF15192_low_11
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 52 - 417
Target Start/End: Complemental strand, 37495456 - 37495091
Alignment:
| Q |
52 |
atcatagtcatacgcttcgccggctttaacaaatcaacctttcgaacgctttcttgttccagaccttgctttgcgagacgcatatcttatttgcttacca |
151 |
Q |
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| T |
37495456 |
atcatagtcatatgcttcacctgctttaacaaatctacctttcacacgttttcttgtatcagcccttgctttgcgagacgcatatcttatttgcttacca |
37495357 |
T |
|
| Q |
152 |
aacctgatttgttgtaccaagtcaacttataaatttaagaatcatatgatagttaacgcttgatgagttgttaactttagaatcatatgatagttaacac |
251 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37495356 |
aacctgatttgttgtaccaagtcaacttataaatttacgaatcatatgatagttaacgctcgatgagttgttaactttagaatcatatgatagttaacac |
37495257 |
T |
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| Q |
252 |
agtccaaataactgttagcactctaattcacttatttatgttttacagtattattatacaatagagaataaacttcaatacacatttatatataatgcag |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37495256 |
agtccaaataactgttagcactctaattcacttatttatgttttacagtattattatacaatagagaataaacttcaatacacatttatatataatgcag |
37495157 |
T |
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| Q |
352 |
gaagaaacaaagaaaataacaaaatagttctagatttgtagacacttctaatgacttcagcctatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37495156 |
gaagaaacaaagaaaataacaaaatagttctagatttgtagacacttctaatgacttcagcctatg |
37495091 |
T |
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