View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_18 (Length: 397)
Name: NF15192_low_18
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 26 - 382
Target Start/End: Complemental strand, 22632196 - 22631831
Alignment:
| Q |
26 |
caccgcacttcatcttctccagcggcaaggtgagtttcgacaaatccaaggttattgcagaatcaattcagaaataaaatgcttcaccatggttattgct |
125 |
Q |
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| T |
22632196 |
caccgcacttcatcttctccagcgacaaggtgagtttcgacaaatccaaggttattgtagaatcaattataaaacaaaatgcttcaccatggttattgct |
22632097 |
T |
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| Q |
126 |
ttccttgtctgtcttcaaaaacaacacttcagcatcgtgcatggaaccttttgatttctgcgatctggtcaacccgttaaatcattgccacccataaatt |
225 |
Q |
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| T |
22632096 |
ttccttgtctgccttcaaaaacaacacttcagcatc----atggaaccttttgatttctgcgatctggccaacccgttaaatcattgccacccataaatt |
22632001 |
T |
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| Q |
226 |
cgacagaattcatatgcattgaagtgggaagcagccaacttttagcttcaaa-------------caaatcaataataacttgtttggattctacacttg |
312 |
Q |
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| T |
22632000 |
cgacagaattcatatgcattgaagtgggaagcagacaacttttagcttcaaacaaaccaagaaaccaaatcaataataacttgtttggattctacacttg |
22631901 |
T |
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| Q |
313 |
tgttgttttatcacagatgcaattttgtttactctttctatgtcatgacaaaagctgaagatacatgatt |
382 |
Q |
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| T |
22631900 |
tgttgttttatcacagatgcaattttgtttactctttctctgtcatgacaaaagctgaagattcatgatt |
22631831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 28323308 - 28323393
Alignment:
| Q |
199 |
ccgttaaatcattgccacccataaattcgacagaattcatatgcattgaagt----gggaagcagccaacttttagcttcaaacaaa |
281 |
Q |
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| T |
28323308 |
ccgttaaattattgccaccg-taaatttgacataattcgcatgcattgaagtagatgggaagcagccaactttgagcttcaaacaaa |
28323393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 33 - 382
Target Start/End: Complemental strand, 36233990 - 36233632
Alignment:
| Q |
33 |
cttcatcttctccagcggcaaggtgagtttcgacaaatccaaggttattgcagaatcaattcagaaataaaatgcttcaccatggttattgctttccttg |
132 |
Q |
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| T |
36233990 |
cttcatcttctccagcgacaaggtgagtttcgacaaatccaaggttattgcagaatcaattcaaaaacaaaatgtttcaccatggttattgctttccttg |
36233891 |
T |
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| Q |
133 |
tctgtcttcaaaaacaacacttcagcatcgtgcatggaaccttttgatttctgcgatctggtcaacccgttaaatcattgccacccataaattcgacaga |
232 |
Q |
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| T |
36233890 |
cctgccttcaaaaacaacacttcagcatcg----tggaaccttttgatttctgcgatctggccaacccgttaaatcattgccacccataaattcgacata |
36233795 |
T |
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| Q |
233 |
attcatatgcattgaagtgggaagcagccaacttttagcttcaaa-------------caaatcaataataacttgtttggattctacacttgtgttgtt |
319 |
Q |
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| T |
36233794 |
attcatatgcattgaagtgggaagcagccaacttttagcttcaaacaaaccaagaaaccaaatcaataataacttgtttggattctacacttgtgttgtt |
36233695 |
T |
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| Q |
320 |
ttatcacagatgcaattttgtttactctttctatgtcatgacaaaagctgaagatacatgatt |
382 |
Q |
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| T |
36233694 |
ttatcacagatgcaattttgtttactctttctctgtcatgacaaaagctggagattcatgatt |
36233632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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