View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_19 (Length: 393)
Name: NF15192_low_19
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 36947463 - 36947084
Alignment:
| Q |
1 |
tcagaaataataaaatgtaagctttcacatttattggcaatgcgcataaatggtttggaactaatgtatggagttaattttcaggtatatgcaagcattt |
100 |
Q |
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| T |
36947463 |
tcagaaataataaaatgtaagctttcacatttattggcaatgcgcataaatggtttggaactaatgtacggagttaattttcaggtatatgcaagcattt |
36947364 |
T |
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| Q |
101 |
caagaacgattatggctctttgccggttcttcaactaccaattggttcaatacctttgggtacatgggcgccaaaagtgggggaatccaataaacagcca |
200 |
Q |
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| T |
36947363 |
caagaacgattatggctctttgccggttcttcaactaccaattggttcgatacctttgggtacatgggcgccaaaagtgggggaatccaataaacagcca |
36947264 |
T |
|
| Q |
201 |
attgcaactctaaggccaaatgcctctcttagtgctgctatctctctaatgaatcaaggtgatcatttttctttttcaaaatagcacccaagtctctttt |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
36947263 |
attgcaacgctaaggccaaatgcctctcttagtgctgctatctctctaatgaatcaaggtgataatttttctttttcaaaatagcagccaagtctctttt |
36947164 |
T |
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| Q |
301 |
ttgtttaggcagtgaatggtacttgtgtttgttattgtagtgatatccatgttagaagcaaaaggtattattgacattga |
380 |
Q |
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| T |
36947163 |
ttgtttaggcagtgaatggtacttgtgtttgttattgtagtgatatccatgttagaagcaaaaggtattattgacattga |
36947084 |
T |
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