View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_2 (Length: 608)
Name: NF15192_low_2
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 33496012 - 33495425
Alignment:
| Q |
1 |
atgaatatctagaatcttgatattcctcaccgtgttcgagcctttatatggcatttagctcatcattgcttgcccgcccatgtcaatcttaatgcaagag |
100 |
Q |
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|||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||| ||||| |
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| T |
33496012 |
atgaatatctggactctcgatattcctcaccgtgttcgagcctttatgtggcatttagctcatcatttcttgcccacccgtgtcaatcttaatgtaagag |
33495913 |
T |
|
| Q |
101 |
gaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattcatctcttctttgtttgtgcaaaagccatggattgttggaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33495912 |
gaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattaatctcttctttgtttgtgcaaaagccatggattgttggaagaa |
33495813 |
T |
|
| Q |
201 |
tattggcttatatgatgtgttaagtgatcttctccctcttgctaacgactttactacattgttgtttgactttatgcacagattatcctctcaacaacaa |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33495812 |
tattggcttatatgatgtgttaagtgagcttctccctcttgctaacaactttactacattgttgtttgactttacgcacagattatcctctcaacaacaa |
33495713 |
T |
|
| Q |
301 |
caaacagccggcatgctcttgtggagcctttggaaaagtcgcaacatcaaattatgggattccacggagacagaaaccgcaatcaccatctcttgagcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
33495712 |
caaacagccggcatgctcttgtggagcctttggaaaagtcgcaacatcaaattatgggattccacggagacagaaaccacaatcaccatctctcgagcaa |
33495613 |
T |
|
| Q |
401 |
aggacactctttatgaatggagttgcatgcaaagagcaaaaacttagccactaaacccggatcaccttatctcttgggttaaacctcgtgggggcatgat |
500 |
Q |
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| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |
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| T |
33495612 |
atgacactcttcatgaatggaattgcatgcaaagagcaaaaacttagccactaaacccggatcatcatatctcttgggttaaacctcgtgggggcacgat |
33495513 |
T |
|
| Q |
501 |
taaatgtaacgcggatgccacgatttttcaaaacaacacaatatatagcaagatatggcatatgttatcggaactcttgaggcgaactcctt |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33495512 |
taaatgtaacgcggatgccacgatttttcaaaacaaca----aaatagcaggatatggcatatgttatcgaaactcttgaggcgaactcctt |
33495425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 4243564 - 4244100
Alignment:
| Q |
1 |
atgaatatctagaatcttgatattcctcaccgtgttcgagcctttatatggcatttagctcatcattgcttgcccgcccatgtcaatcttaatgcaagag |
100 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| ||||||||| |||||| |||||||||| ||||||||||| | | |||||||||||||||||||| |
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| T |
4243564 |
atgaatatctggaatctcaatattcctcaccgtgtccgagcctttctatggcgtttagctcataattgcttgcccactcgtgtcaatcttaatgcaagag |
4243663 |
T |
|
| Q |
101 |
gaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattcatctcttctttgtttgtgcaaaagccatggattgttggaagaa |
200 |
Q |
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|||| ||||||||||||||||| ||||||| ||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4243664 |
gaatccagtgcgaggaatcatgtgttatgtttgaaaattttgcggaatgccacactcatctcttctttgtttgcgcaaaagccatggattgttggaagaa |
4243763 |
T |
|
| Q |
201 |
tattggcttatatgatgtgttaagtgatcttctccctcttgctaacgactttactacattgttgtttgactttatgcacagattatcctctcaacaacaa |
300 |
Q |
| |
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|||||||||| ||| |||||||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4243764 |
tattggcttacatgttgtgttaagtgagctgctgcctcttgctaacaactttactacattgttgtttgactttatgcacagattatgctctcaacaacaa |
4243863 |
T |
|
| Q |
301 |
caaacagccggcatgctcttgtggagcctttggaaaagtcgcaacatcaaattatgggattccacggagacagaaaccgcaatcaccatctcttgagcaa |
400 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
4243864 |
caagcagccggcatgctcttatggagcctttggaaaagtcgcaacatcaaattatgggattccacggacacgacaaccgcaatcaccatctctcgagcaa |
4243963 |
T |
|
| Q |
401 |
aggacactctttatgaatggagttgcatgcaaagagcaaaaacttagccactaaacccggatcaccttatctcttgggttaaacctcgtgggggcatgat |
500 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||||| | ||| | |||||| |||||| |||||||||||||||||| ||| |||||||| |
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| T |
4243964 |
aggacactcttcatgaatggagttgcatgcaaagtgcaaaaactcaaccaatcaacccgaatcaccatatctcttgggttaaaccaactggcggcatgat |
4244063 |
T |
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| Q |
501 |
taaatgtaacgcggatgccacgatttttcaaaacaac |
537 |
Q |
| |
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|||||||||| ||||||| | ||||||||||||||| |
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| T |
4244064 |
taaatgtaacatggatgccgcaatttttcaaaacaac |
4244100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 16484738 - 16484692
Alignment:
| Q |
313 |
atgctcttgtggagcctttggaaaagtcgcaacatcaaattatggga |
359 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || |||||||| |
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|
| T |
16484738 |
atgctcttgtggagcatttggaaaagtcgcaacacaaagttatggga |
16484692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 45187607 - 45187652
Alignment:
| Q |
395 |
gagcaaaggacactctttatgaatggagttgcatgcaaagagcaaa |
440 |
Q |
| |
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|||||||||||||||| | ||||||||||| |||||||||||||| |
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| T |
45187607 |
gagcaaaggacactctcaacgaatggagttgtatgcaaagagcaaa |
45187652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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