View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_20 (Length: 391)
Name: NF15192_low_20
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 4143725 - 4143358
Alignment:
| Q |
17 |
atgcaccaccaaacaacatcaatcttgaacaaccatatagaacttggtaccactttcagcccnnnnnnnnttggatgaatggtaaagaactcagtccatt |
116 |
Q |
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| T |
4143725 |
atgcaccaccaaacaacatcaatcttgaacaaccatatagaacttggtaccactttcagcccaaaaaaaattggatgaatggtaaagaactcagtccatt |
4143626 |
T |
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| Q |
117 |
tacttttagtacatgtgtcaaattttgtagtattgattctttcttttataatttactgatgattatgcttatatctaactcttttttatgtatcatttga |
216 |
Q |
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| T |
4143625 |
tacttttagtacatgtgtcaaattttgtagtattgattctttcttttataatttactgatgattatgcttatatctaactcttttttatgtatcacttga |
4143526 |
T |
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| Q |
217 |
catgttttttgaccaaaattcaaaaccattaccttcatcatgcagatcctaatggtatgcttcatactttcagttatttacttctttgtcctcaacaata |
316 |
Q |
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| T |
4143525 |
catgttttttgaccaaaattcaaaaccattaccttcatcatgcagatcctaatggtatgcttcatactttcagttattcacttctttgtcctcaacatta |
4143426 |
T |
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| Q |
317 |
tacatatgactagaggaaaattaaatatatgtcatgttccat-----atttgatctaatgattagtat |
379 |
Q |
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| T |
4143425 |
tacatatgactagaggaaaattaaatatatgtcatgttccatatgaaatttgatctaatgattagtat |
4143358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 4138988 - 4138890
Alignment:
| Q |
185 |
ttatatctaactcttttttatgtatcatttgacatgttttt-tgaccaaaattcaaaaccattaccttcatcatgcagatcctaatggtatgcttcatac |
283 |
Q |
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| T |
4138988 |
ttatatctaactctttt--atgtatcatttgacatgttttgctgactaaaattgaaaaccatcatcttcatcatgcagatcctaatggtatgcttcatac |
4138891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 4139116 - 4139063
Alignment:
| Q |
25 |
ccaaacaacatcaatcttgaacaaccatatagaacttggtaccactttcagccc |
78 |
Q |
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| T |
4139116 |
ccaaacaatatcaattctgaacagccatacagaacttggtaccactttcagccc |
4139063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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