View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_21 (Length: 390)
Name: NF15192_low_21
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 40369620 - 40369259
Alignment:
| Q |
18 |
agtttaaccattagatgtcgtatataagccttgcttagtttagtatgagtgattttcaaggcaaaactatttggacaattgaagtattgaaatggctatg |
117 |
Q |
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| T |
40369620 |
agtttaaccattagatcttgtatataagccttgcttagtttagtgtgagtgattttcacggcaaaactatttggacaattgaagtattgaaatggttatg |
40369521 |
T |
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| Q |
118 |
tcacaccattgattggttgataaatgttatgttgtgtccactgaaatggaccatatttcaaattcaggagtgttaatcatacttatggagctttaatgca |
217 |
Q |
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| T |
40369520 |
tcacaccattgattggttgataaatgttatgttgtgtccactgaaatggaccatatttcgaattcag-agtgttaatcatacttatggagctttaatgca |
40369422 |
T |
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| Q |
218 |
cgtgatgggcattagtgattaaagtgggctattaatttgtgatcacatctactcgtgtgggtctaccaacacttattactcacacaaatatcaatcacat |
317 |
Q |
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| T |
40369421 |
cgtgatgggcattagtgattaaagtgggctattaatttgtgatcacatctactcgtgtgggtctaccaacacttattactcacacaaatatcaatcacat |
40369322 |
T |
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| Q |
318 |
tcagaatcagaattcagaacataaactctcgttgatatcatccatccttatttgtgtctgtgc |
380 |
Q |
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| T |
40369321 |
tcagaatcagaattcagaacataaactctcgttgatatcatccatccttatttgtgtttgtgc |
40369259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 40066274 - 40066434
Alignment:
| Q |
21 |
ttaaccattagatgtcgtatataagccttgcttagtttagtatgagtgattttcaaggcaaaactatttgga----------caattgaagtattgaaat |
110 |
Q |
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| T |
40066274 |
ttaaccattagatctcgtata--agccttgcttagtataatgtgagtgattttcactgcaaaactatctagaaaaaaaatgacaattgaagtattgaaat |
40066371 |
T |
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| Q |
111 |
ggctatgtcacaccattgattggttgataaatgttatgttgtgtccactgaaatggaccatat |
173 |
Q |
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| T |
40066372 |
ggttatgtcacaccattgattggttgataaatgttatggtgtgtcaactgaaatggactatat |
40066434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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