View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_27 (Length: 314)
Name: NF15192_low_27
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 37080957 - 37080662
Alignment:
| Q |
1 |
ttggttagacttcacttgccttcatgtcgattccaatttataagggcgtcttctaaaataagcaatacatttttatatttgatctaactcacaattatac |
100 |
Q |
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| T |
37080957 |
ttggttagacttcacttgccttcatgtcgactccaatttataagggcgtcttctaaagtaagcaatacatttttatatttgatctaactcacaattatac |
37080858 |
T |
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| Q |
101 |
atgtgtaatcagaaatgctgaaggacatactacaacagaagccaacttggatacatttaacagacacatataaaaggcttccacttcattatgcagcatc |
200 |
Q |
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| T |
37080857 |
atgtgtaatcagaaatgctgaaggacatactacaacagaagccaacttggatacatttaacagacacatataaaaggcttccacttcattatgcagcatc |
37080758 |
T |
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| Q |
201 |
tataggttaccttgtaggtgttgtttatttaactggcaaatgtaaatgttgcaccaatcaaagggacaaatatggctatttcccaattcatctagc |
296 |
Q |
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| T |
37080757 |
tataggttaccttgtaggtgttgtttatttaactggcaaatgtaaatgttgcaccaatcaaagggacaaatatggctatttcccaattcatctagc |
37080662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 66 - 296
Target Start/End: Complemental strand, 37071059 - 37070829
Alignment:
| Q |
66 |
tacatttttatatttgatctaactcacaattatacatgtgtaatcagaaatgctgaaggacatactacaacagaagccaacttggatacatttaacagac |
165 |
Q |
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| T |
37071059 |
tacatttttatatttgatctaactcacaattatacatgtgtgattagaaatgctaagggtcatactgcaaaagaagccaacttggatacattcaacggac |
37070960 |
T |
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| Q |
166 |
acatataaaaggcttccacttcattatgcagcatctataggttaccttgtaggtgttgtttatttaactggcaaatgtaaatgttgcaccaatcaaaggg |
265 |
Q |
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| T |
37070959 |
acatatgaaaggcttccacttcattatgcagcatctataggttaccttaaaggcgttgaattattacttggcatatgtaaatgttgcaccaatcaaaggg |
37070860 |
T |
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| Q |
266 |
acaaatatggctatttcccaattcatctagc |
296 |
Q |
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| T |
37070859 |
acaaatatggctatttctcaattcatctagc |
37070829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 296
Target Start/End: Original strand, 36953424 - 36953611
Alignment:
| Q |
109 |
tcagaaatgctgaaggacatactacaacagaagccaacttggatacatttaacagacacatataaaaggcttccacttcattatgcagcatctataggtt |
208 |
Q |
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| T |
36953424 |
tcagaaatgcttaacaccatactaaaaaacaagccaacttagatccattcaatggacaaacatgaaatgcttcctcttcattacgcatcgactataggtt |
36953523 |
T |
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| Q |
209 |
accttgtaggtgttgtttatttaactggcaaatgtaaatgttgcaccaatcaaagggacaaatatggctatttcccaattcatctagc |
296 |
Q |
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| T |
36953524 |
accttgaaggcgttgttcaattaattgaaatgtgtaaatgttgcaccattcaaagggacaaatatggttatttcccaattcatctagc |
36953611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 296
Target Start/End: Original strand, 36947007 - 36947177
Alignment:
| Q |
126 |
catactacaacagaagccaacttggatacatttaacagacacatataaaaggcttccacttcattatgcagcatctataggttaccttgtaggtgttgtt |
225 |
Q |
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||||||| || | ||||||| |||||| ||||||| |||| | || ||||||||| |||||||| |||||||||||||||||||||| ||||||| | |
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| T |
36947007 |
catactagaaaacaagccaatttggatccatttaagggacaaagatggaaggcttcctcttcattacgcagcatctataggttaccttgaaggtgtttat |
36947106 |
T |
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| Q |
226 |
tatttaactggcaaatgtaaatgttgcaccaatcaaagggacaaatatggctatttcccaattcatctagc |
296 |
Q |
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| T |
36947107 |
ttattacttggcacatgcaaatgctgcacaattcaaagggacaataatggttatttcccaattcatctagc |
36947177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 36964586 - 36964665
Alignment:
| Q |
144 |
aacttggatacatttaacagacacatataaaaggcttccacttcattatgcagcatctataggttaccttgtaggtgttg |
223 |
Q |
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||||||||| ||||||| |||| | || ||| ||||| |||||||| |||| ||||||||||||||||| |||||||| |
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| T |
36964586 |
aacttggatccatttaagggacaaacatggaagacttcctcttcattacgcagtatctataggttaccttgaaggtgttg |
36964665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 12494758 - 12494635
Alignment:
| Q |
173 |
aaaggcttccacttcattatgcagcatctataggttaccttgtaggtgttgtttatttaactggcaaatgtaaatgttgcaccaatcaaagggacaaata |
272 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||| || |||||| ||||| ||||| | |||||||||||||| |
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| T |
12494758 |
aaaggcttccacttcattacgcagcatctataggttaccttgaaggtgttgaattattaattgacaaatgcaaatgctgcacaattcaaagggacaaatt |
12494659 |
T |
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| Q |
273 |
tggctatttcccaattcatctagc |
296 |
Q |
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| T |
12494658 |
atgttatttcccaattcatgtagc |
12494635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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