View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_32 (Length: 281)
Name: NF15192_low_32
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 77 - 263
Target Start/End: Original strand, 50243663 - 50243849
Alignment:
| Q |
77 |
tgtatgaaataccgacacatacaagacactgacacgttgacaccagtaataaatggagagcatgtacttattgaacgtaactacatgtatcagtgttggg |
176 |
Q |
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| T |
50243663 |
tgtatgaaatactgacacatacaagacactgacacgttgacaccagtaataaatggagagcatgtacttattgaacgtaactacatgtatcagtgttggg |
50243762 |
T |
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| Q |
177 |
cagtgagtcagacaccagacatgtagtatatgattgtattgttgtggggatttgcagggttctgtgcaagttttatgaagctatatc |
263 |
Q |
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| T |
50243763 |
cagtgagtcagacaccagacatgtagtatatgattgtattgttgtggggatttgcagggttctgtgcaagttttatgaagctatatc |
50243849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50243595 - 50243636
Alignment:
| Q |
1 |
atttttctttcctaagctgaatggaaaattgaggattgatgc |
42 |
Q |
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| T |
50243595 |
atttttctttcttaagctgaatggaaaattgaggattgatgc |
50243636 |
T |
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