View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_33 (Length: 281)
Name: NF15192_low_33
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 36572023 - 36571756
Alignment:
| Q |
18 |
agagatatcgagtagtcaaatgaaaatagttgaaaggtcgtttcagatcacaaactacagtttatccagcagaaggaagggtggtgaatgta---atgta |
114 |
Q |
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| T |
36572023 |
agagagatcgagtagtcaaatgaaaatagttgaaaggtcgtttctgatcacaaactacagtttatccagcagaaggaagggtggtgaatgtagtaatgta |
36571924 |
T |
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| Q |
115 |
ttcatatcagtatatgttaccaatcaccctaaccaacacaaattgggctccacaatgcacactcccagttttcatttattc-----atttctacatatat |
209 |
Q |
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| T |
36571923 |
ttcatatcagtatatgttaccaatcaccccaaccaacacaaattgggctccacattgcacactcccagttttcatttattcatttaatttctacatatat |
36571824 |
T |
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| Q |
210 |
atttttcacc-ttttgcccatctctctcttataaagctgcaaacgagatctatccacttcatctcagt |
276 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36571823 |
atttttcacctttttgcccatctctctcttataaagctgcaaacgagatctatccacttcatcacagt |
36571756 |
T |
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