View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15192_low_36 (Length: 276)

Name: NF15192_low_36
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15192_low_36
NF15192_low_36
[»] scaffold0140 (2 HSPs)
scaffold0140 (100-254)||(33326-33481)
scaffold0140 (15-63)||(33239-33287)


Alignment Details
Target: scaffold0140 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 33326 - 33481
Alignment:
Q  100 gctctaaaatcatatatcatgttttggctaaaccaattagaatcctttgtcatttgcacttgtagactttgcttatagaaaatgattttatgt-caaaaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  33326 gctctaaaatcatatatcatgttttggctaaaccaattagactcctttgtcatttgcacttgtagactttgcttatagaaaatgattttatatacaaaaa 33425  T
Q  199 accgtgttatgacttttgtgttttttctttagaaatatgtgtaaattgaaggagtt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33426 accgtgttatgacttttgtgttttttctttagaaatatgtgtaaattgaaggagtt 33481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 33239 - 33287
Alignment:
Q  15 cataggccagctatagaacagagaggatacaaagcgaccttaactagtg 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33239 cataggccagctatagaacagagaggatacaaagcgaccttaactagtg 33287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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