View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_37 (Length: 266)
Name: NF15192_low_37
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 45484779 - 45484545
Alignment:
| Q |
24 |
cctccttgatgcctcccctacttcttgccttatccnnnnnnnnctttttt-atttaaactaccatgcatgctaacgtctattcacttttgctcagtcttt |
122 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45484779 |
cctccttgatgcctcccctatttcttgccttatcaaaaacaaattttttttatttaaactaccatgcatgctaacgtctattcacttttgctcagtcttt |
45484680 |
T |
|
| Q |
123 |
gcagcacttgttgtgcttaggaattttgagcttatacattttacctttccaataaaaatgtgtgcaaatatagtaaaaaatagaaagacttcatacgcac |
222 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45484679 |
gcagcacttgttgtgcttaggaattttgagcttatacattttacctttccaataaaaatgtgtgcaaatatagtaaaaaatagaaagacttcatacgcac |
45484580 |
T |
|
| Q |
223 |
cttaatggaaagatccttaagttttggagaattat |
257 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |
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| T |
45484579 |
cttaatggaaagatccttaagttttggagcattat |
45484545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 7116033 - 7116065
Alignment:
| Q |
26 |
tccttgatgcctcccctacttcttgccttatcc |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
7116033 |
tccttgatgcctcccctacttcttgccttatcc |
7116065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 14267823 - 14267585
Alignment:
| Q |
24 |
cctccttgatgcctcccctacttcttgccttatccnnnnnnnn-cttttttatttaaactaccatgcatgc----taacgtctattcacttttgctcagt |
118 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
14267823 |
cctccttgatgccttccctacttcttgccttatccaaaaaaaaacttttttatttaaactaccatgcatgcatgctaacgtctattcacttttgctcagt |
14267724 |
T |
|
| Q |
119 |
ctttgcagcacttgttgtgcttaggaattttgagcttatacattttacctttccaataaaaatgtgtgcaaatatagtaaaaaatagaaagacttcatac |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14267723 |
ctttgcagcacttgttgtgcttaggaattttgagcttatacattttacctttccaataaaaatgtgtgcaaatatagtaaaaaatagaaagacttcatac |
14267624 |
T |
|
| Q |
219 |
gcaccttaatggaaagatccttaagttttggagaattat |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
14267623 |
gcaccttaatggaaagatccttaagttttggagcattat |
14267585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 10758966 - 10758937
Alignment:
| Q |
25 |
ctccttgatgcctcccctacttcttgcctt |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
10758966 |
ctccttgatgcctcccctacttcttgcctt |
10758937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 12484625 - 12484658
Alignment:
| Q |
25 |
ctccttgatgcctcccctacttcttgccttatcc |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
12484625 |
ctccttgatgcctcccctacttcttgccttatcc |
12484658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 22717461 - 22717495
Alignment:
| Q |
24 |
cctccttgatgcctcccctacttcttgccttatcc |
58 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
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|
| T |
22717461 |
cctccttgatgcctcccctacttcttgtcttatcc |
22717495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 29501282 - 29501315
Alignment:
| Q |
25 |
ctccttgatgcctcccctacttcttgccttatcc |
58 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
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|
| T |
29501282 |
ctccttgatgcctcccctacttcttgtcttatcc |
29501315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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