View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_46 (Length: 238)
Name: NF15192_low_46
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_46 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5104098 - 5103861
Alignment:
| Q |
1 |
atacttagccacatcattaatgttccccccacaacttgtatagagtttgcagcttccatttgggtctgtagaactttccctaactttttcattggcaggc |
100 |
Q |
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| T |
5104098 |
atacttagccacatcattaatgttccccccacaacttgtatagagtttgcagcttccatttgggtctttagaactttccctaactttttcattggcaagc |
5103999 |
T |
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| Q |
101 |
atggcatgaaattctttgaaaatctttaatgtatcatccattaattccttagcaactccatggttcacaacctaccatcaaattaagaacatatacaaca |
200 |
Q |
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| T |
5103998 |
atggcatgaaattctttgaaaatcttatatgtatcatccattaattccttagcaactccatggttcacaacctaccatcaaattaagaacatatacaaca |
5103899 |
T |
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| Q |
201 |
agattaacctttgcatgatcattctatcaaattatggt |
238 |
Q |
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| T |
5103898 |
agattaacgtttgcatgatcattctatcaaattatggt |
5103861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 5110641 - 5110476
Alignment:
| Q |
35 |
cttgtatagagtttgcagcttccatttgggtctgtagaactttccctaactttttcattggcaggcatggcatgaaattctttgaaaatctttaatgtat |
134 |
Q |
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|||||||||||||| |||||||||||||| ||| | |||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5110641 |
cttgtatagagtttacagcttccatttggatcttttgaactttcaattaacttttcattggcaggcatggcatgaaattctttgaaaattcttaatgtat |
5110542 |
T |
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| Q |
135 |
catccattaattccttagcaactccatggttcacaacctaccatcaaattaagaacatatacaaca |
200 |
Q |
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| T |
5110541 |
catccattaattccttagcaactccatgattcacaacctagcattacattaagcacaaatataaca |
5110476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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