View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_48 (Length: 235)
Name: NF15192_low_48
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_48 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 43435722 - 43435540
Alignment:
| Q |
40 |
cttatcgcttgcagatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcc |
139 |
Q |
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| T |
43435722 |
cttatcgcttgcagagatgctctttaaaagcataatgcaatccagaactgaaggcttatatgaactatccatcatatgctcataaagcttgacagcatcc |
43435623 |
T |
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| Q |
140 |
tccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc |
222 |
Q |
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| T |
43435622 |
tccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaattcatgaccgacactcttcatctc |
43435540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 43443916 - 43443734
Alignment:
| Q |
40 |
cttatcgcttgcagatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcc |
139 |
Q |
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| T |
43443916 |
cttatcgcttgcagagatgctctttaaaagcataatgcaatccagaactgaaggcttatatgaactatccatcatatgctcataaagcttgacagcatcc |
43443817 |
T |
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| Q |
140 |
tccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc |
222 |
Q |
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| T |
43443816 |
tccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaattcatgaccgacactcttcatctc |
43443734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 43427205 - 43427035
Alignment:
| Q |
52 |
agatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatctta |
151 |
Q |
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| T |
43427205 |
agataggctctttaaaagcacaatgcaatccggagctgtaggcttatatgaactatccatcatatgctcgtaaagcttgacactgtcctccatcatccta |
43427106 |
T |
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| Q |
152 |
ttcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc |
222 |
Q |
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| T |
43427105 |
ttatttagaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc |
43427035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 43422595 - 43422457
Alignment:
| Q |
84 |
gaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgta |
183 |
Q |
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| T |
43422595 |
gaaccgatggctcatatgaaccatccatcataagctcgtaaagcttaacagcatccttcatcatctgattctttacaaactgcattgttatcttcatata |
43422496 |
T |
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| Q |
184 |
agtatcaagatccaattcatgaccgacactcttcatctc |
222 |
Q |
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| T |
43422495 |
agtatcaatctccaattcataattcacactcttcatctc |
43422457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 21185 - 21050
Alignment:
| Q |
40 |
cttatcgcttgcagatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcc |
139 |
Q |
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| T |
21185 |
cttatcgcttgcagatgtgctctttaaaagcataatgcaatccagaactgatggcttatatgaactatccatcatatgctcataaagcttgacaacatcc |
21086 |
T |
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| Q |
140 |
tccatcatcttattcttttgaagctgcctcgatatc |
175 |
Q |
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| T |
21085 |
tccatcatcttattcttttgaagctgcctcgatatc |
21050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 40186092 - 40186262
Alignment:
| Q |
43 |
atcgcttgcagatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcctcc |
142 |
Q |
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||||||| ||| ||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| | ||| |
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| T |
40186092 |
atcgctttcagcgatgttctttaaaagcataatgcagtccagaactgatggcttgtatgaactatccatcatatgctcatgaagcccg---------tcc |
40186182 |
T |
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| Q |
143 |
atcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc |
222 |
Q |
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| T |
40186183 |
atcatcctattctcttgaagctgcctcgatatctttatggaagtattgagatccaattcatgaccgacactcttcatctc |
40186262 |
T |
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