View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_49 (Length: 228)
Name: NF15192_low_49
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 39545008 - 39545186
Alignment:
| Q |
17 |
agtcagcacttcaccagcaaagtcataataagaaacaagagccgcagttaaagaatttgtcaaacatcccacaatgctatggtgggtgccagtagtaatt |
116 |
Q |
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| T |
39545008 |
agtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaatttttcaaacatcccacaatgctatggtgggtggcagtagtaatt |
39545107 |
T |
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| Q |
117 |
ataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttgatagtggaagccagt |
195 |
Q |
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| T |
39545108 |
ataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttgatagtggaagccagt |
39545186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 39554322 - 39554500
Alignment:
| Q |
17 |
agtcagcacttcaccagcaaagtcataataagaaacaagagccgcagttaaagaatttgtcaaacatcccacaatgctatggtgggtgccagtagtaatt |
116 |
Q |
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| T |
39554322 |
agtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaatttttcaaacatcccacaatgctatggtgggtggcagtagtaatt |
39554421 |
T |
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| Q |
117 |
ataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttgatagtggaagccagt |
195 |
Q |
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| T |
39554422 |
ataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttgatagtggaagccagt |
39554500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 39587448 - 39587611
Alignment:
| Q |
26 |
ttcaccagcaaagtcataataagaaacaagagccgcagttaaagaatttgtcaaacatcccacaat---gctatggtgggtgccagtagtaattatagga |
122 |
Q |
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| T |
39587448 |
ttcaccagcaaatacgtagtaagaaacaagagcttcagctaaggaatttttcaagcaccccacaatagtgttattggtggtgccaatagtaatcatagga |
39587547 |
T |
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| Q |
123 |
tttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttgatagtg |
186 |
Q |
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| T |
39587548 |
tttttgtagcaaaagaacacaccaatactaacagggggaagtagtaaatcaagatttgatagtg |
39587611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 17507292 - 17507365
Alignment:
| Q |
120 |
ggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttgatagtggaagcca |
193 |
Q |
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| T |
17507292 |
ggattcttgtaacaaaagaacacaccaacatccactgcaggtagaagtaaatcaaggttagagagtggtagcca |
17507365 |
T |
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