View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_5 (Length: 483)
Name: NF15192_low_5
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 217 - 472
Target Start/End: Complemental strand, 47599301 - 47599038
Alignment:
| Q |
217 |
aaatcatgtatcaatattgtgttaactgataaaaagta--------aaacaaagaacataagtattatcgtacattgatcatcgtattttatttttcaat |
308 |
Q |
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| T |
47599301 |
aaatcatgtatcaatattgtattaattgataaaaagtatacttttaaaacaaagaatataagtattatcgtacattgatcatcgtattttatttttcaat |
47599202 |
T |
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| Q |
309 |
ctggttaaccttctataatgcatttcttattgtagtggaaacatattatttttaaattttaacaatagtggaaacatggttgatgtcacaccataggaat |
408 |
Q |
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| T |
47599201 |
ctggttaaccttctataatgcatttcttattgtagtggaaacatattatttttaaattttaacaatagtggaaacatggttgatgtcacaccatgggaat |
47599102 |
T |
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| Q |
409 |
catattctgtgaagttgatgtattatcttgttaataaaaaagaaaatggtcctattgtgatgat |
472 |
Q |
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| T |
47599101 |
catatcctgtgaagctgatgtattatcttgttaatgaaaaagaaaatggtcctattgttatgat |
47599038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 47599386 - 47599316
Alignment:
| Q |
167 |
cattgaactgctttatg-aatagtccaagtgacaactatggaaccggaaagaaatcatgtatcaatattgt |
236 |
Q |
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| T |
47599386 |
cattggactgctttatgtaatagtccaagtgacaactatggaactggaaagaaatcatgtatcaatattgt |
47599316 |
T |
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