View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15192_low_50 (Length: 224)

Name: NF15192_low_50
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15192_low_50
NF15192_low_50
[»] chr1 (4 HSPs)
chr1 (13-206)||(25589854-25590047)
chr1 (12-148)||(50780345-50780481)
chr1 (12-148)||(44540449-44540585)
chr1 (12-55)||(36617842-36617885)
[»] chr4 (8 HSPs)
chr4 (12-148)||(6680787-6680923)
chr4 (14-158)||(25171114-25171258)
chr4 (14-140)||(5724939-5725065)
chr4 (12-148)||(50912836-50912972)
chr4 (12-77)||(53977831-53977896)
chr4 (17-65)||(20290481-20290529)
chr4 (17-77)||(31355658-31355718)
chr4 (12-77)||(27187113-27187178)
[»] chr7 (4 HSPs)
chr7 (12-147)||(8266758-8266893)
chr7 (12-152)||(295169-295309)
chr7 (12-148)||(35895134-35895270)
chr7 (12-148)||(43088028-43088164)
[»] chr5 (2 HSPs)
chr5 (12-146)||(22663890-22664024)
chr5 (17-77)||(10275516-10275576)
[»] chr8 (3 HSPs)
chr8 (12-144)||(37185883-37186014)
chr8 (12-148)||(37790187-37790323)
chr8 (17-77)||(1287806-1287866)
[»] chr2 (4 HSPs)
chr2 (12-148)||(296598-296734)
chr2 (12-148)||(29961247-29961383)
chr2 (35-77)||(13270146-13270188)
chr2 (19-77)||(17256261-17256319)
[»] chr3 (4 HSPs)
chr3 (14-140)||(18648709-18648835)
chr3 (12-148)||(11747906-11748042)
chr3 (12-77)||(9698555-9698620)
chr3 (35-77)||(22930925-22930967)
[»] scaffold0336 (1 HSPs)
scaffold0336 (12-148)||(386-522)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 25590047 - 25589854
Alignment:
Q  13 gaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagtac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25590047 gaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagtac 25589948  T
Q  113 aacaaactcctcaagctcaaacaaccaagaaagaggaaaactacaatgtgttgcttggagacaaaaagtacaattcttaatttctactcatttt 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25589947 aacaaactcctcaagctcaaacaaccaagaaagagggaaactacaatgtgttgcttggggacaaaaagtacaattcttaatttctactcatttt 25589854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 50780481 - 50780345
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||| | || ||||||||||||||||||||||| |||||  | |||||||||||| |  |||||||||||||| |||||||||||| |||     
T  50780481 agaagcaaaggatttgaagactatgaagattgaagaattgcagagttctcttgaagcacatgaactgttggtgattgatagaagttcagaaagatcagtt 50780382  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
     ||||| ||| ||| | ||||||||||||||||||||    
T  50780381 gaacaagctcttcaggttcaaacaaccaagaaagagg 50780345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 44540585 - 44540449
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||||| || ||||||||| ||||||||||||| |||||  | |||||||||||| |  |||||||||||||| | |||||||||| |||     
T  44540585 agaagcaaaggatgtgaagactatgaaggttgaagaattgcagagttctcttgaagcacatgaactgttggtgattgatagaagatcagaaagatcagtt 44540486  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
     | ||| ||| ||| | ||||||||||||||||||||    
T  44540485 tagcaagctcttcaggttcaaacaaccaagaaagagg 44540449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 36617842 - 36617885
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaa 55  Q
    |||| |||||||||| ||||||||||||||||||||||||||||    
T  36617842 agaatcaaaggatgtgaaaactatgaagattgaagaattgcaaa 36617885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 6680923 - 6680787
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||||||||| || ||||||||||     
T  6680923 agaagcaaaggatgtgaagactatgaagattgaagaattgcaaagttcccttgaagcacatgaactattggtgattgatagaggtccaaaaagattagtt 6680824  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
    |||||| | | |||||||||||||| |||||||||||    
T  6680823 caacaagcccttcaagctcaaacaatcaagaaagagg 6680787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 25171114 - 25171258
Alignment:
Q  14 aagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagtaca 113  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||   |||| ||||||  ||||||||||||||||||||||||||| || | | ||    
T  25171114 aagcaaaggatgtgaaaactatgaagattgaagaattgcagagttcccctgaaggacatgagctactggtgattgatagaggttcagaaatatcatttca 25171213  T
Q  114 acaaactcctcaagctcaaacaaccaagaaagaggaaaactacaa 158  Q
    |||| ||| ||| |||||||||||||||||| ||| ||| |||||    
T  25171214 acaagctcttcaggctcaaacaaccaagaaaaagggaaattacaa 25171258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 5725065 - 5724939
Alignment:
Q  14 aagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagtaca 113  Q
    ||||||||||||| || |||| |||| ||||||||||||| |||||  | |||||||||||| || |||||||||||||| |||||||||||||||| ||    
T  5725065 aagcaaaggatgtgaagactacgaaggttgaagaattgcagagttctcttgaagcacatgaactattggtgattgatagaagttcagaaagattagttca 5724966  T
Q  114 acaaactcctcaagctcaaacaaccaa 140  Q
     ||| ||| ||| | ||||||||||||    
T  5724965 gcaagctcttcatgttcaaacaaccaa 5724939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 50912836 - 50912972
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||||| || |||||||||||||||||| |||| |||||  | |||||||||||| || |||||||||||||| |||| || |||| ||      
T  50912836 agaagcaaaggatgtgaagactatgaagattgaagaactgcagagttctcttgaagcacatgaactattggtgattgatagaagttctgagagatcagac 50912935  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
    |||||| | | ||| |||||||||| |||||||||||    
T  50912936 caacaagcccttcaggctcaaacaatcaagaaagagg 50912972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 53977831 - 53977896
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaatt 77  Q
    |||| |||||||||| |||| | ||||||||||||||||||||||||| |||||| | ||||||||    
T  53977831 agaatcaaaggatgtgaaaaatttgaagattgaagaattgcaaagttcattggaaactcatgaatt 53977896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 20290481 - 20290529
Alignment:
Q  17 caaaggatgttaaaactatgaagattgaagaattgcaaagttccttgga 65  Q
    |||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  20290481 caaaggatgtgaaaactttgaagattgaagaattgaaaagttccttgga 20290529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 31355658 - 31355718
Alignment:
Q  17 caaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaatt 77  Q
    |||||||||| || ||  ||||||||||||||||||| ||||| |||||||||||||||||    
T  31355658 caaaggatgtgaagacattgaagattgaagaattgcagagttcattggaagcacatgaatt 31355718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 27187113 - 27187178
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaatt 77  Q
    |||| |||||||||| || ||  |||||||||| |||||||| ||||| |||||||||||||||||    
T  27187113 agaatcaaaggatgtgaagacattgaagattgaggaattgcagagttcattggaagcacatgaatt 27187178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 8266758 - 8266893
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||| ||||||||| ||||||||||||||| |||||||||| | |||| |  ||||||||||  |||||||||||||||||||||||||||||| |||     
T  8266758 agaagtaaaggatgtgaaaactatgaagattaaagaattgcagacttcccttaaagcacatgagctactggtgattgatagaggttcagaaagatcagtt 8266857  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagag 147  Q
    |||||| | | |||||||||||||| ||||||||||    
T  8266858 caacaagcccttcaagctcaaacaatcaagaaagag 8266893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 295169 - 295309
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||||| || ||||||||| ||||||||||||| |||||  | |||||||||||| || ||||||||||||||  |||| | |||| |||     
T  295169 agaagcaaaggatgtgaagactatgaaggttgaagaattgcagagttctcttgaagcacatgaactattggtgattgatagaatttcatagagatcagtt 295268  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagaggaaaa 152  Q
    |||||| | | ||||| ||||||||||||||||||||||||    
T  295269 caacaagcccttcaagttcaaacaaccaagaaagaggaaaa 295309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 35895134 - 35895270
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||| | || ||||||||| ||||||||||||| |||||  | |||||||||||| |  || ||| ||||||| ||||| ||||||||||     
T  35895134 agaagcaaaggatttgaagactatgaaggttgaagaattgcagagttctcttgaagcacatgaactgttgctgactgatagaagttcaaaaagattagtt 35895233  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
    || ||| ||| ||| | ||||||||||||||||||||    
T  35895234 cagcaagctcttcaggttcaaacaaccaagaaagagg 35895270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 43088028 - 43088164
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||| ||||||||| || | ||||| | ||||||||||||   ||||  | |||||||||||| |  |||||||||||||| |||||||||||| |||     
T  43088028 agaagtaaaggatgtgaagattatgatggttgaagaattgcggggttctcttgaagcacatgaactgttggtgattgatagaagttcagaaagatcagtt 43088127  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
    |||||| ||| ||| | ||||||||||||||||||||    
T  43088128 caacaagctcttcaggttcaaacaaccaagaaagagg 43088164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 22664024 - 22663890
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    |||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| || |||     
T  22664024 agaagctaaggatgtgaaaactatgaaaattgaggaattgcaaagttccttggaagcacatgaattaatggtgattgatagaggattagaaatatcagtg 22663925  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaaga 146  Q
    || ||| ||| ||||| ||||| ||| ||||||||    
T  22663924 cagcaagctcttcaagttcaaaaaactaagaaaga 22663890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 10275516 - 10275576
Alignment:
Q  17 caaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaatt 77  Q
    |||||||||| || ||  |||||||||| |||||||| ||||| |||||||||||||||||    
T  10275516 caaaggatgtgaagacattgaagattgaggaattgcagagttcattggaagcacatgaatt 10275576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 37186014 - 37185883
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||||| || ||||||||| ||||||||||||| |||||  | |||||||||||| | ||||||||||||||| |||||||||||| |||     
T  37186014 agaagcaaaggatgtgaagactatgaaggttgaagaattgcagagttctcttgaagcacatgaact-ctggtgattgatagaagttcagaaagatcagtt 37185916  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaa 144  Q
    || ||||||| ||| | ||||||||||||||||    
T  37185915 cagcaaactcttcaggttcaaacaaccaagaaa 37185883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 37790323 - 37790187
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||||| || |||||| || ||||||||||||| |||||  | |||||||||||| |  | |||||||||||| |||||||||||| |||     
T  37790323 agaagcaaaggatgtgaagactatgcaggttgaagaattgcagagttctcttgaagcacatgaactgttagtgattgatagaagttcagaaagatcagtt 37790224  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
    || ||| ||| ||| | ||||||||||||||||||||    
T  37790223 cagcaagctcttcaggttcaaacaaccaagaaagagg 37790187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 1287806 - 1287866
Alignment:
Q  17 caaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaatt 77  Q
    |||||||||| || ||  |||||||||| |||||||| ||||| || ||||||||||||||    
T  1287806 caaaggatgtgaagacattgaagattgaggaattgcagagttcattagaagcacatgaatt 1287866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 296598 - 296734
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||||| || ||||||||| ||||||||||||| |||||  | ||||||||||||||  |||||||||||||| |||||||||||| |||     
T  296598 agaagcaaaggatgtgaagactatgaaggttgaagaattgcagagttctcttgaagcacatgaattgttggtgattgatagaagttcagaaagatcagtt 296697  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
    || ||  ||| ||| | ||||||||||||||||||||    
T  296698 cagcatgctcttcaggttcaaacaaccaagaaagagg 296734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 29961247 - 29961383
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||||| || ||||||||| ||||||||||||| |||||  | |||||||||||| |  |||||||||||||| |||||||||||| |||     
T  29961247 agaagcaaaggatgtgaagactatgaaggttgaagaattgcagagttctcttgaagcacatgaactgttggtgattgatagaagttcagaaagatcagtt 29961346  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
    |||||| ||| | | | ||||||||||||||||||||    
T  29961347 caacaagctctttaggttcaaacaaccaagaaagagg 29961383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 13270188 - 13270146
Alignment:
Q  35 tgaagattgaagaattgcaaagttccttggaagcacatgaatt 77  Q
    ||||||||||||||||||| ||||| || ||||||||||||||    
T  13270188 tgaagattgaagaattgcagagttcattagaagcacatgaatt 13270146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 17256261 - 17256319
Alignment:
Q  19 aaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaatt 77  Q
    |||||||| |||||  ||||||||| |||||||||||||||  ||||||| ||||||||    
T  17256261 aaggatgtgaaaaccttgaagattgtagaattgcaaagttcactggaagctcatgaatt 17256319  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 18648835 - 18648709
Alignment:
Q  14 aagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagtaca 113  Q
    ||||||||||||| || |||| |||| ||||||||||||| |||||  | |||||||||||| || |||||||||||||| |||||||||||||||| ||    
T  18648835 aagcaaaggatgtgaagactacgaaggttgaagaattgcagagttctcttgaagcacatgaactattggtgattgatagaagttcagaaagattagttca 18648736  T
Q  114 acaaactcctcaagctcaaacaaccaa 140  Q
     ||| ||| ||| | ||||||||||||    
T  18648735 gcaagctcttcatgttcaaacaaccaa 18648709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 11748042 - 11747906
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||| | || ||||||||| ||||||||||||| |||||  | |||||||||||| |  || ||||||||||| |||||||||||| ||      
T  11748042 agaagcaaaggatttgaagactatgaaggttgaagaattgcagagttctcttgaagcacatgaactgttgttgattgatagaagttcagaaagatcagat 11747943  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
    || ||| ||| ||| | ||||||||||||||||||||    
T  11747942 cagcaagctcttcaggttcaaacaaccaagaaagagg 11747906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 9698555 - 9698620
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaatt 77  Q
    |||| |||||||||| || ||  |||||||||| |||||||| ||||| |||||||||||||||||    
T  9698555 agaatcaaaggatgtgaagacattgaagattgaggaattgcagagttcattggaagcacatgaatt 9698620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 22930967 - 22930925
Alignment:
Q  35 tgaagattgaagaattgcaaagttccttggaagcacatgaatt 77  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||    
T  22930967 tgaagattgaagaattgcatagttctttggaggcacatgaatt 22930925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 386 - 522
Alignment:
Q  12 agaagcaaaggatgttaaaactatgaagattgaagaattgcaaagttccttggaagcacatgaattactggtgattgatagaggttcagaaagattagta 111  Q
    ||||||||||||||| || |||||||||||||||||| |||| |||||  | |||||||||||| || |||||||||||||| |||| || |||| ||      
T  386 agaagcaaaggatgtgaagactatgaagattgaagaactgcagagttctcttgaagcacatgaactattggtgattgatagaagttctgagagatcagac 485  T
Q  112 caacaaactcctcaagctcaaacaaccaagaaagagg 148  Q
    |||||| | | ||| |||||||||| |||||||||||    
T  486 caacaagcccttcaggctcaaacaatcaagaaagagg 522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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