View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_6 (Length: 477)
Name: NF15192_low_6
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 1980633 - 1980401
Alignment:
| Q |
9 |
agcacagaagtcatcaaacaaaatatcgtttaaaactagaaataatgttagaaatcttcaagctttaacaactcatttagaattactaattaagcagcac |
108 |
Q |
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| T |
1980633 |
agcacagaagtcatcaaacaaaatatcgtttaaaactagaaataatgttagaaatcttcaagcttcaacaactcatttagaattactaattaagcagcac |
1980534 |
T |
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| Q |
109 |
aacttacaacaactcattttcaaggaaaactacaggatcagggtcccttatagcagctttaagtaaaccacgagcatcttctgagaatttattgcatctt |
208 |
Q |
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| T |
1980533 |
aacttacaacaactcattttcaaggaaaactacaggatcagggtcccttatagcagctttaagtaaaccacgagcatcttctgagaatttattgcatctt |
1980434 |
T |
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| Q |
209 |
gtctgaattaatcatcatttggaaactcagtaa |
241 |
Q |
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| T |
1980433 |
gtctgaattaatcatcatttggaaactcagtaa |
1980401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 264 - 459
Target Start/End: Complemental strand, 1980402 - 1980207
Alignment:
| Q |
264 |
aaaacagaattcctaagatgccatctaataatctttgagggaaaccaacttttcacgacaaaactttattcatcaagagcatggcttgcaaattccaaac |
363 |
Q |
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| T |
1980402 |
aaaacagaattcctaagatgccatctaataatctttgagggaaaccaacttttcacgacaaaactttattcatcaagagcatggcttgcaaattccaaac |
1980303 |
T |
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| Q |
364 |
agaaaaccaaacacgtggaaatcatgcggtgcgaaaagatgtaaaattaacatacttaattgcacactgaatttaagaaagaaaggatgtaatcga |
459 |
Q |
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| T |
1980302 |
agaaaaccaaacacgtggaaatcatgcggtgcgaaaagatgtaaaattaaaatacttaattgcacactgaatttaagaaagaaaggatgtaatcga |
1980207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 90522 - 90341
Alignment:
| Q |
9 |
agcacagaagtcatcaaacaaaatatcgttt-aaaactagaaataatgttagaaatcttcaagctttaacaactcatttagaattactaattaagcagca |
107 |
Q |
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|||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
90522 |
agcacataagtcatcaaataaaatatcattttaaaactagaaataatgttagaaatcttcaagcttcaacaactcatttaaaattactaattaagcagca |
90423 |
T |
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| Q |
108 |
caacttacaacaactcattttcaaggaaaactacaggatcagggtcccttatagcagctttaagtaaaccacgagcatcttc |
189 |
Q |
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| T |
90422 |
caacttacagcaactcattttcaaggaaaactacaggatcagggtcccttatagcagctttaagtaaaccacgagcatcttc |
90341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 246 - 444
Target Start/End: Complemental strand, 89779 - 89583
Alignment:
| Q |
246 |
tgtattcttatcacactgaaaacagaattcctaagatgccatctaataatctttgagggaaaccaacttttcacgacaaaactttattcatcaagagcat |
345 |
Q |
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| T |
89779 |
tgtattcttatcacacagaagacggaattcatatgatgccatctaataatct--gagggaagccagcttctcacgaaaaaactttattcatcaagagcat |
89682 |
T |
|
| Q |
346 |
ggcttgcaaattccaaacagaaaaccaaacacgtggaaatcatgcggtgcgaaaagatgtaaaattaacatacttaattgcacactgaatttaagaaag |
444 |
Q |
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| T |
89681 |
ggcttgcagattccaaacagaaaaccaaacacatagaaatcatggggtgccaaaagatgtaaaattaacacacttaattgcacactgaatttaagaaag |
89583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 2004586 - 2004429
Alignment:
| Q |
32 |
tatcgtttaaaactagaaataatgttagaaatcttcaagctttaacaactcatttagaattactaattaagcagcacaac---ttacaacaactcatttt |
128 |
Q |
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| T |
2004586 |
tatcgtttaaaactagaaataatgttagaaattttcaagcttcaacaactcatttagaattactaattaagcagcacaacaacttacaacaactcatttt |
2004487 |
T |
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| Q |
129 |
caaggaaaactacaggatcagggtcccttatagcagctttaagtaaaccacgagcatc |
186 |
Q |
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| T |
2004486 |
caaggaaaactgcaggatcggggtcccttatagcagctttaagtaaaccacgagcatc |
2004429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 2002949 - 2002803
Alignment:
| Q |
46 |
agaaataatgttagaaatcttcaagctttaacaactcatttagaattactaattaagcagcacaac---ttacaacaactcattttcaaggaaaactaca |
142 |
Q |
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| T |
2002949 |
agaaataatgttagaaatcttcaagcttcaacaacgcatttagaattactaattaagcagcacaacaacttacaataactcattttcaaggaaaactgca |
2002850 |
T |
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| Q |
143 |
ggatcagggtcccttatagcagctttaagtaaaccacgagcatcttc |
189 |
Q |
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| T |
2002849 |
ggatcggggtcccttatagcagctttaagtaaaccacgagcatcttc |
2002803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 22352554 - 22352477
Alignment:
| Q |
112 |
ttacaacaactcattttcaaggaaaactacaggatcagggtcccttatagcagctttaagtaaaccacgagcatcttc |
189 |
Q |
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|||||| ||||||||||||||||||| | ||||| |||||||||||||||||||| | | |||||||| |||||||| |
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| T |
22352554 |
ttacaagaactcattttcaaggaaaaatgcaggaccagggtcccttatagcagctctgaataaaccacatgcatcttc |
22352477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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