View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15192_low_9 (Length: 438)
Name: NF15192_low_9
Description: NF15192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15192_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 30990965 - 30990543
Alignment:
| Q |
1 |
gttatgcatcctcgaggtaattcagaagcgccgcaagcttttaatggtgatagtgacctctacggtacttcagaactttatctttcagatgggtgtggca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30990965 |
gttatgcatcctcgaggtaattcagaagcgccgcaagcttttaatggtgatagtgacctctacggtacttcagaattttatctttcagatgggtgtggca |
30990866 |
T |
|
| Q |
101 |
catcagataatgagttgaatacttatttgaatgaaagccttgagcgcaatatggagattaatgttctagagtggtggaaagttaactctggccgatatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30990865 |
catcagataatgagttgaatacttatttgaatgaaagccttgagcgcaatatggagattaatgttctagagtggtggaaagttaactctggccgatatcc |
30990766 |
T |
|
| Q |
201 |
aattcttgcaaaaattgcaagagacgttttggctatacctattacaactgtggcgtctgaatctacatttagcacaagtgagagagttcttgacccatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30990765 |
aattcttgcaaaaattgcaagagacgttttggctatacctattacaactgtggcgtctgaatctacatttagcacaagtgagagagttcttgacccatac |
30990666 |
T |
|
| Q |
301 |
cgtagctctttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30990665 |
cgtagctctttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgaga |
30990566 |
T |
|
| Q |
401 |
atcttgaattgcttgagcaaggt |
423 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30990565 |
atcttgaattgcttgagcaaggt |
30990543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 43072680 - 43073102
Alignment:
| Q |
1 |
gttatgcatcctcgaggtaattcagaagcgccgcaagcttttaatggtgatagtgacctctacggtacttcagaactttatctttcagatgggtgtggca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43072680 |
gttatgcatcctcgaggtaattcagaagcgccgcaagcttttaatggtgatagtgacctctacggtacttcagaattttatctttcagatgggtgtggca |
43072779 |
T |
|
| Q |
101 |
catcagataatgagttgaatacttatttgaatgaaagccttgagcgcaatatggagattaatgttctagagtggtggaaagttaactctggccgatatcc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43072780 |
catcagataatgagttgaatacttatttgaatgaaagccttgagcgcaatatggagattaatgttctagagtggtggaaagttaactctggccgatatcc |
43072879 |
T |
|
| Q |
201 |
aattcttgcaaaaattgcaagagacgttttggctatacctattacaactgtggcgtctgaatctacatttagcacaagtgagagagttcttgacccatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43072880 |
aattcttgcaaaaattgcaagagacgttttggctatacctattacaactgtggcgtctgaatctacatttagcacaagtgagagagttcttgacccatac |
43072979 |
T |
|
| Q |
301 |
cgtagctctttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgaga |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43072980 |
cgtagctctttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgaga |
43073079 |
T |
|
| Q |
401 |
atcttgaattgcttgagcaaggt |
423 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
43073080 |
atcttgaattgcttgagcaaggt |
43073102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 4457852 - 4457430
Alignment:
| Q |
1 |
gttatgcatcctcgaggtaattcagaagcgccgcaagcttttaatggtgatagtgacctctacggtacttcagaactttatctttcagatgggtgtggca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||| | |
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| T |
4457852 |
gttatgcatcctcgaggtaattcagaagcgctgcaagcttttaatggtgttagtgacgtctacggtacttcagaattttatctttcagacgggtgtggta |
4457753 |
T |
|
| Q |
101 |
catcagataatgagttgaatacttatttgaatgaaagccttgagcgcaatatggagattaatgttctagagtggtggaaagttaactctggccgatatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4457752 |
catcagataatgagttgaatacttatttgaatgaaaatcttgagcgcaatatggagattaatgttctagagtggtggaaagtcaactctggccgatatcc |
4457653 |
T |
|
| Q |
201 |
aattcttgcaaaaattgcaagagacgttttggctatacctattacaactgtggcgtctgaatctacatttagcacaagtgagagagttcttgacccatac |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
4457652 |
aattcttgcaaaaattgcaagagacgttttggctatacctattacaactgtggcgtctgaatctgcatttagcacaagtgggagagttcttgacccatac |
4457553 |
T |
|
| Q |
301 |
cgtagctctttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgaga |
400 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
4457552 |
cgtagctctttgacacctaccacggttgaggcacttatatgcacttaagattggctcaaaggagcatcttcatccttgattacaactgaagattttgaaa |
4457453 |
T |
|
| Q |
401 |
atcttgaattgcttgagcaaggt |
423 |
Q |
| |
|
||||||| ||||||||||||||| |
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| T |
4457452 |
atcttgagttgcttgagcaaggt |
4457430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 276 - 405
Target Start/End: Complemental strand, 7875421 - 7875292
Alignment:
| Q |
276 |
aagtgagagagttcttgacccataccgtagctctttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatcc |
375 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7875421 |
aagtgagagagttcttgacccatattgtagctctttaactcctacctcaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcgtcc |
7875322 |
T |
|
| Q |
376 |
ttgattacaaccgaagattttgagaatctt |
405 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
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|
| T |
7875321 |
ttgattacaactgaagattttgagaatctt |
7875292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 295 - 423
Target Start/End: Original strand, 33134591 - 33134719
Alignment:
| Q |
295 |
ccataccgtagctctttaacacctaccacaattgaggcacttatatgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagatt |
394 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
33134591 |
ccataccgtagcactttaacacccaccacgattgagcaacttatatgcactcaagattggctcaaaggagcatcttcatccttgatgagaactgaagatt |
33134690 |
T |
|
| Q |
395 |
ttgagaatcttgaattgcttgagcaaggt |
423 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
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|
| T |
33134691 |
ttgagaatcttgagttgcttgagcaaggt |
33134719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 340 - 423
Target Start/End: Original strand, 33133207 - 33133290
Alignment:
| Q |
340 |
tgcactcaagattggctcaaaggagcatcttcatccttgattacaaccgaagattttgagaatcttgaattgcttgagcaaggt |
423 |
Q |
| |
|
|||||| |||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
33133207 |
tgcactgaagattcgctaaaatgagcatcttcatccttgattacaactgaagattttgagaatcttgagttgcttgagcaaggt |
33133290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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