View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15193_high_12 (Length: 250)
Name: NF15193_high_12
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15193_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 18685226 - 18685465
Alignment:
| Q |
1 |
tctgaatttgtcactgtcgatgaagaagagggtccggtcacaagtgtgtgttgggctccagatggacgccatttagccgttggattgacgaattcacatg |
100 |
Q |
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| T |
18685226 |
tctgaatttgtcactgtcgatgaagaagagggtccggtcacaagtgtgtgttgggctccagatggacgccatttagccgttggattgacgaattcacatg |
18685325 |
T |
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| Q |
101 |
ttcagctctgggataccgctgctaacaaacaggtaaataccgtttgtgttctttgtattcaccatagtgaacatcttcttcgttgtattgttttcaaagt |
200 |
Q |
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| T |
18685326 |
ttcagctctgggataccgctgctaacaaacaggtaaataccgtttgtgttctttgtattcaccatagtgaacatcttcttcgttgtattgttttcaaagt |
18685425 |
T |
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| Q |
201 |
ggaaatggtttctaatatttttcatgtttgtggtttcattt |
241 |
Q |
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| T |
18685426 |
ggaaatggtttctaata-ttttcatgtttgtggtttcattt |
18685465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 13119837 - 13119750
Alignment:
| Q |
52 |
tgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagctctgggataccgctgctaacaaacaggtaaata |
139 |
Q |
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| T |
13119837 |
tgggctcaagatggatgccatttagccgttgggttgaacaattcccttgttcaaatctgggatacaactgctaagaaacaggtaaata |
13119750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 43527409 - 43527278
Alignment:
| Q |
8 |
ttgtcactgtcgatgaagaagagggtccggtcacaagtgtgtgttgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagct |
107 |
Q |
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| T |
43527409 |
ttgtcactgtagatgatgatgatggtcctgtcacaagcgttagctgggcccccgatggtcgccatttagccattgggttgaacaactcccatgtccagct |
43527310 |
T |
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| Q |
108 |
ctgggataccgctgctaacaaacaggtaaata |
139 |
Q |
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| T |
43527309 |
ctgggataccactgcttgtaaacaggtaaata |
43527278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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