View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15193_high_17 (Length: 203)
Name: NF15193_high_17
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15193_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 27508268 - 27508438
Alignment:
| Q |
20 |
gttagttcatgtaaccggccacagccaccacctccaccgccgcaataccatcaccacagcaatcaattctcgccttactaccaccgcgctcctccttcca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27508268 |
gttagttcatgtaaccggccacagccaccacctccaccgccgcaataccatcaccacaacaatcaattctcgccttactaccaccgtgctcctccttcca |
27508367 |
T |
|
| Q |
120 |
cagccggttaccttcaccaccatcatcttgcaactccggtggcacatcacagaccgttggctctctctgct |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27508368 |
cagccggttaccttcaccaccatcatcttgcaactccggtggcacatcacagaccgttggctctccctgct |
27508438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University