View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15193_low_1 (Length: 710)
Name: NF15193_low_1
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15193_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 6 - 691
Target Start/End: Complemental strand, 24695639 - 24694957
Alignment:
| Q |
6 |
acaatatatgttcgtgatttgggatctcttcggcttttcaaaaggaaggaaggtctactaggtagaagaagagcattctcaaagcgtgtcaatgtagttt |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695639 |
acaatatatgttcgtgatttgggatctcttcggcttttcaaaaggaaggaaggtctactaggtagaagaagagcattctcaaagcgtgtcaatgtagttt |
24695540 |
T |
|
| Q |
106 |
ggttcacatgtgtgtggaacatttgaaagacaagaaac-------tatttcacaacaaataaaggcacnnnnnnnnn-tgcacgaggagatgaaagttta |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
24695539 |
ggttcacatgtgtgtggaacatttgaaagacaagaaacaagaaactatttcccaacaaataaaggcacaaaaaaaaaatgcacgaggagatgaaagttta |
24695440 |
T |
|
| Q |
198 |
ttcttggaactggttgcgtattaaattaaagatcaataattacaacattgtacaatggtgtttgaatccgcgggttttccttgacgatattacggtttga |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695439 |
ttcttggaactggttgcgtattaaattaaatatcaataattacaacattgtgcagtggtgtttgaatccgcgggttttccttgacgatattacggtttga |
24695340 |
T |
|
| Q |
298 |
aaattcagattgttctggtgattttaaagtgcacaagtgacttaattcataccatctaattcagctcagattttatttgtctcggttgtgtcttatcata |
397 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695339 |
aaattcagattgttctggtgattttaaagtgcacaggtgacttaattcataccatctaattcagctcagattttatttgtctcggttgtgtcttatcata |
24695240 |
T |
|
| Q |
398 |
gcagtgtgttaggtttgcaacaatttgggtggtattgtgctatggtattatttgctttgggattgtgtggatattatctagccaagatttgtggtcaata |
497 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24695239 |
gcagtgtgttaggtttgcaacaatttggatggtattgtgctatggtattatttgctttgggattgtgtggatattatctagctaagatttg--------- |
24695149 |
T |
|
| Q |
498 |
tttgggtggtttcaaaattgaggtggagggcannnnnnnnnnnnnnnggctaggtgtaatttaaatgcaacaagcttttgaggatttgttcattgtgcac |
597 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695148 |
--tgggtggtttcaaaattgaggtggagggcattttttgtcttttttggctaggtgtaatttaaatgcaacaagcttttgaggatttgttcattgtgcac |
24695051 |
T |
|
| Q |
598 |
tatcttggttttatttcaaaatctttgtccgtttgtctctgaacctttaaaagatgatcgtgttttcattatctattagtattgatgttcgtta |
691 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24695050 |
tatcttggttgtatttcaaaatctttatccgtttgtctccgaacctttaaaagatgattgtgttttcattatctattagtattgatgttcgtta |
24694957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 9 - 446
Target Start/End: Complemental strand, 24708170 - 24707724
Alignment:
| Q |
9 |
atatatgttcgtgatttgggatctcttcggcttttcaaaaggaaggaaggtctactaggtagaagaagagcattctcaaagcgtgtcaatgtagtttggt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
24708170 |
atatatgttcgtgatttgggatctcttcggcttttcaaaaggaaggaaggtctactaggtagcggaagagcattctcaaagcgtgtcagtgtagtttggt |
24708071 |
T |
|
| Q |
109 |
tcacatgtgtgtggaacatttgaaagac-------aagaaactatttcacaacaaataaaggcacnnnnnnnnn-tgcacgaggagatgaaagtttattc |
200 |
Q |
| |
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|| | |||||||||| |||||| ||||| ||||||||||||||||| ||| |||| ||| ||| |||||||||||||||||||| |
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| T |
24708070 |
tctcctgtgtgtggagcatttggaagactagaaacaagaaactatttcacaataaaaaaagtcacatagaaaaaatgcttgaggagatgaaagtttattc |
24707971 |
T |
|
| Q |
201 |
ttggaactggttgcgtattaaattaaagatcaataattacaacattgtacaatggtgtttgaatccgcgggttttccttgacgatattacggtttgaaaa |
300 |
Q |
| |
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||||||||||||| | ||||||| ||| || | ||||||| ||||| || | |||||||| |||| | || ||||||| ||||||| |||||||| |
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| T |
24707970 |
ttggaactggttgtggattaaatcaaatattcacgattacaatattgtgcagtcgtgtttgagtccgtttgcttgccttgacaatattacattttgaaaa |
24707871 |
T |
|
| Q |
301 |
ttcagattgttctggtgattttaaagtgcacaagtgacttaattcataccatctaattcagctcagattttatttgtctcggttgtgtc-ttatcatagc |
399 |
Q |
| |
|
|| |||| |||||||||||||| ||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| |
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| T |
24707870 |
tttagatggttctggtgattttgaagtgcataattgacttaattcataccctctaattcaactcagattttatttgtctcggttgtgtctttatcgtagc |
24707771 |
T |
|
| Q |
400 |
agtgtgttaggtttgcaacaatttgggtggtattgtgctatggtatt |
446 |
Q |
| |
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||||||||||||||||| || ||||||||||| |||||| ||||||| |
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| T |
24707770 |
agtgtgttaggtttgcagcagtttgggtggtactgtgctctggtatt |
24707724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 594
Target Start/End: Complemental strand, 24707571 - 24707522
Alignment:
| Q |
545 |
ggctaggtgtaatttaaatgcaacaagcttttgaggatttgttcattgtg |
594 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
24707571 |
ggctatgtgtaattcaaatgcaacaagtttttgaggatttgttcattgtg |
24707522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 528
Target Start/End: Complemental strand, 13326127 - 13326066
Alignment:
| Q |
467 |
gatattatctagccaagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
528 |
Q |
| |
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|||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
13326127 |
gatattatgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggc |
13326066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 528
Target Start/End: Complemental strand, 13338463 - 13338402
Alignment:
| Q |
467 |
gatattatctagccaagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
528 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
13338463 |
gatattatgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggc |
13338402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 528
Target Start/End: Original strand, 32636327 - 32636373
Alignment:
| Q |
482 |
agatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
528 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||| |||||||| |
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|
| T |
32636327 |
agatttgtggtcgatattttggtggtttcaaaattgagatggagggc |
32636373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 528
Target Start/End: Complemental strand, 5668000 - 5667939
Alignment:
| Q |
467 |
gatattatctagccaagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
528 |
Q |
| |
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|||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
5668000 |
gatattatgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggc |
5667939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 528
Target Start/End: Original strand, 51285929 - 51285975
Alignment:
| Q |
482 |
agatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
528 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
51285929 |
agatttgttgtctatattttggtggtttcaaaattgaggtggagggc |
51285975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 528
Target Start/End: Complemental strand, 48492007 - 48491961
Alignment:
| Q |
482 |
agatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
528 |
Q |
| |
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|||||||||||| |||||| ||| |||||||||||||| |||||||| |
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| T |
48492007 |
agatttgtggtcgatattttggttgtttcaaaattgagatggagggc |
48491961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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