View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15193_low_12 (Length: 301)

Name: NF15193_low_12
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15193_low_12
NF15193_low_12
[»] chr6 (12 HSPs)
chr6 (115-288)||(13931000-13931173)
chr6 (20-113)||(13930863-13930956)
chr6 (20-113)||(14023896-14023989)
chr6 (145-219)||(14021262-14021336)
chr6 (145-222)||(14045993-14046070)
chr6 (145-222)||(14109055-14109132)
chr6 (20-101)||(14083184-14083265)
chr6 (20-113)||(14106128-14106221)
chr6 (134-222)||(13894381-13894469)
chr6 (68-106)||(13894539-13894577)
chr6 (145-222)||(13863795-13863872)
chr6 (20-101)||(14021102-14021183)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 115 - 288
Target Start/End: Original strand, 13931000 - 13931173
Alignment:
Q  115 gcacgtccagacggtatattcaagaaaaatagtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaa 214  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||| ||| |||    
T  13931000 gcacgtccagattgtatattaaagaaaaatagtgttttgagacatgttgggagcaaggagaaatcatctccgaatagttacaatgcaaataaatcataaa 13931099  T
Q  215 ccattcatctacctagagtaggacttttgctgcacagaccttaatctgatccaccaccaactaactttcgagta 288  Q
    ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  13931100 ccattcatctttctagagtaggacttttactgcacagaccttaatctgatccaccaccaacgaactatcgagta 13931173  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 13930863 - 13930956
Alignment:
Q  20 acataaccacatattacaaagaaaatccccaacaatctattccctagtggattgtttctcctctcccctcaacatctctcaaaacactaaattt 113  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13930863 acataaccacatattacaaagatacaccccaacaatctatttcctagtggattgtttctcctctcccctcaacgtctctcaaaacactaaattt 13930956  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 14023896 - 14023989
Alignment:
Q  20 acataaccacatattacaaagaaaatccccaacaatctattccctagtggattgtttctcctctcccctcaacatctctcaaaacactaaattt 113  Q
    ||||||||| |||||||||||| |  | ||| |||||||||| |||| |||||| ||||||||  ||||||||||||||||||||||| |||||    
T  14023896 acataaccatatattacaaagagatactccaccaatctattcgctagaggattgcttctcctcggccctcaacatctctcaaaacactcaattt 14023989  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 14021262 - 14021336
Alignment:
Q  145 agtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccatt 219  Q
    |||||||||||||||| | |||||||||||||||||| | |  ||| |||| |||||||||||||| ||||||||    
T  14021262 agtgttttgagacatgttaggagcgaggagaaatcatgttcctagatttacaatgcaaataattcacaaaccatt 14021336  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 14045993 - 14046070
Alignment:
Q  145 agtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccattcat 222  Q
    |||||||||| ||||| |||||||||||||||||||| | |  ||| |||| ||||||| |||||| |||||||||||    
T  14045993 agtgttttgaaacatgttgggagcgaggagaaatcatgttcctagatttacaatgcaaacaattcacaaaccattcat 14046070  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 14109055 - 14109132
Alignment:
Q  145 agtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccattcat 222  Q
    |||||||||||||||| ||||||| ||||||||||||||    |||||||| | |||||||||||| ||| |||||||    
T  14109055 agtgttttgagacatgttgggagcaaggagaaatcatctttctagagttacaaagcaaataattcacaaatcattcat 14109132  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 14083184 - 14083265
Alignment:
Q  20 acataaccacatattacaaagaaaatccccaacaatctattccctagtggattgtttctcctctcccctcaacatctctcaa 101  Q
    |||||||||||||||||||||  |  ||||||||||||||| |||||  ||| ||||||| ||  || ||||||||||||||    
T  14083184 acataaccacatattacaaagtgacaccccaacaatctatttcctagaagatggtttctcttcggccatcaacatctctcaa 14083265  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 14106128 - 14106221
Alignment:
Q  20 acataaccacatattacaaagaaaatccccaacaatctattccctagtggattgtttctcctctcccctcaacatctctcaaaacactaaattt 113  Q
    ||||||||| |||||||||||| |  | ||| |||||||||| |||| |||||| | ||||||  |||| |||||||||||||| ||| |||||    
T  14106128 acataaccatatattacaaagagatactccaccaatctattcgctagaggattgctgctcctcggcccttaacatctctcaaaatactgaattt 14106221  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 13894469 - 13894381
Alignment:
Q  134 tcaagaaaaatagtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccattcat 222  Q
    ||||||||||||||||||| ||||||| |||   ||| ||||| ||||||    |||||||| |||||||||||||| ||| |||||||    
T  13894469 tcaagaaaaatagtgttttaagacatgttggagacgatgagaagtcatcttactagagttacaatgcaaataattcataaaacattcat 13894381  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 13894577 - 13894539
Alignment:
Q  68 ggattgtttctcctctcccctcaacatctctcaaaacac 106  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  13894577 ggatagtttctcctcgcccctcaacatctctcaaaacac 13894539  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 13863872 - 13863795
Alignment:
Q  145 agtgttttgagacatgctgggagcgaggagaaatcatctccgaagagttacgatgcaaataattcagaaaccattcat 222  Q
    ||||||||||||||||  | | | |||||||||||||||    |||||||| |||||||||||||| ||| |||||||    
T  13863872 agtgttttgagacatgtcgagtgagaggagaaatcatcttactagagttacaatgcaaataattcacaaaacattcat 13863795  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 14021102 - 14021183
Alignment:
Q  20 acataaccacatattacaaagaaaatccccaacaatctattccctagtggattgtttctcctctcccctcaacatctctcaa 101  Q
    |||||||||||||||||||||| |  |||||| ||||||||  ||||  ||| ||||||| ||  || ||||||||||||||    
T  14021102 acataaccacatattacaaagagacaccccaaaaatctatttgctagaagatagtttctcttcggccatcaacatctctcaa 14021183  T

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