View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15193_low_15 (Length: 241)
Name: NF15193_low_15
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15193_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8690836 - 8690606
Alignment:
| Q |
1 |
atacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnn-gagatagtggtttacaagctcttcatctgttggtcggaa |
99 |
Q |
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| T |
8690836 |
atacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaa |
8690737 |
T |
|
| Q |
100 |
tctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgcnnnnnnngtagcaacaaaatga |
199 |
Q |
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| T |
8690736 |
tctgaatccaacaggaacgtcatagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgctttttttgtagcaacaaaatga |
8690637 |
T |
|
| Q |
200 |
gacaaagagagactttctaataccacctatg |
230 |
Q |
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| T |
8690636 |
gacaaagagagactttctaataccacctatg |
8690606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 8705108 - 8704991
Alignment:
| Q |
1 |
atacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnn-gagatagtggtttacaagctcttcatctgttggtcggaa |
99 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8705108 |
atacatcaacttcagctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaa |
8705009 |
T |
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| Q |
100 |
tctgaatccaacaggaac |
117 |
Q |
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| T |
8705008 |
tctgaatccaacaggaac |
8704991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8740184 - 8740138
Alignment:
| Q |
1 |
atacatcaacttcagctataacattgttgacaatggaatcattacca |
47 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8740184 |
atacatcaacttcagctataacattgtttacaatggaatcattacca |
8740138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 8722124 - 8722069
Alignment:
| Q |
61 |
gagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa |
116 |
Q |
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| T |
8722124 |
gagatagtagtttacaagctcttgatctgttggatggaatctgaatccaacaggaa |
8722069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 8738615 - 8738501
Alignment:
| Q |
3 |
acatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnn-gagatagtggtttacaagctcttcatctgttggtcggaatc |
101 |
Q |
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||||||||||| ||||| |||||||| ||| |||| |||||||||||||| ||| ||||| || || || ||||||| |||||||||||||| |
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| T |
8738615 |
acatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgattaactagttcttcatttgttggtcggaatc |
8738516 |
T |
|
| Q |
102 |
tgaatccaacaggaa |
116 |
Q |
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||||||| ||||||| |
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| T |
8738515 |
tgaatccgacaggaa |
8738501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 8723526 - 8723482
Alignment:
| Q |
5 |
atcaacttcagctataacattgttgacaatggaatcattaccaag |
49 |
Q |
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| T |
8723526 |
atcaacttcagctataacattgtttacaatggcgtcattaccaag |
8723482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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