View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15193_low_17 (Length: 221)

Name: NF15193_low_17
Description: NF15193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15193_low_17
NF15193_low_17
[»] chr5 (2 HSPs)
chr5 (1-89)||(34500710-34500798)
chr5 (164-207)||(34500873-34500916)
[»] chr3 (3 HSPs)
chr3 (1-89)||(10215473-10215568)
chr3 (161-207)||(10215640-10215686)
chr3 (33-89)||(49093790-49093846)
[»] chr7 (1 HSPs)
chr7 (45-89)||(21373648-21373692)
[»] chr6 (1 HSPs)
chr6 (45-89)||(11764296-11764340)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 34500710 - 34500798
Alignment:
Q  1 ccacctgacttaaaaactacaaccgaaagaatgattttaactgcaatacatattaaatgggttaaccccatttataaactattttatat 89  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34500710 ccacctgacttaaaaactacaaccagaagaatgattttaactgcaatacatattaaatgggttaaccccatttataaactattttatat 34500798  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 34500873 - 34500916
Alignment:
Q  164 ccaaatttctcagtctgcctcttacaaactttccagatctgtgc 207  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  34500873 ccaaatttctcagtctgcctctcacaaactttctagatctgtgc 34500916  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 10215473 - 10215568
Alignment:
Q  1 ccacctgacttaaaaactacaaccgaaagaatgattttaactgcaatacatattaaat-------gggttaaccccatttataaactattttatat 89  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||    
T  10215473 ccacctgacttaaaaactacaaccggaagaatgattttaactgcaatacatattaaatgggttaagggttaaccccatttataaaatattttatat 10215568  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 10215640 - 10215686
Alignment:
Q  161 aacccaaatttctcagtctgcctcttacaaactttccagatctgtgc 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  10215640 aacccaaatttctcagtctgcctctcacaaactttccagatctgtgc 10215686  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 49093846 - 49093790
Alignment:
Q  33 gattttaactgcaatacatattaaatgggttaaccccatttataaactattttatat 89  Q
    |||||||||| || |||||| ||||||| ||||||||||||| || ||| |||||||    
T  49093846 gattttaacttcattacatactaaatggtttaaccccatttaaaatctaatttatat 49093790  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 21373692 - 21373648
Alignment:
Q  45 aatacatattaaatgggttaaccccatttataaactattttatat 89  Q
    |||| ||||||||||| ||||||||||||| || |||||||||||    
T  21373692 aatagatattaaatggtttaaccccatttaaaatctattttatat 21373648  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 11764296 - 11764340
Alignment:
Q  45 aatacatattaaatgggttaaccccatttataaactattttatat 89  Q
    |||| ||||||||||| ||||||||||||| || |||||||||||    
T  11764296 aatagatattaaatggtttaaccccatttaaaatctattttatat 11764340  T

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